Scientific production
Articles
Boudignon E, Foulquier C, Soucaille P. 2023, Improvement of the Genome Editing Tools Based on 5FC/5FU Counter Selection in Clostridium acetobutylicum. Microorganisms. Nov 3;11(11):2696. doi: 10.3390/microorganisms11112696.
Garrigues L, Do TD, Bideaux C, Guillouet SE, Meynial-Salles I. 2022 Insights into Clostridium tetani: From genome to bioreactors., Biotechnol. Adv., 54, 107781
Pregnon G, Minton NP, Soucaille P. 2022, Genome Sequence of Eubacterium limosum B2 and Evolution for Growth on a Mineral Medium with Methanol and CO2 as Sole Carbon Sources. Microorganisms. 2022 Sep 5;10(9) doi: 10.3390/microorganisms10091790.
- Tomi-Andrino C, Norman R, Millat T, Soucaille P, Winzer K, Barrett DA, King J, Kim DH. 2021 Physicochemical and metabolic constraints for thermodynamics-based stoichiometric modelling under mesophilic growth conditions, PLoS Comput Biol. 2021 Jan 25;17(1):e1007694. doi: 10.1371/journal.pcbi.1007694.
- Wilding-Steele T, Ramette Q, Jacottin P, Soucaille P. 2021, Improved CRISPR/Cas9 Tools for the Rapid Metabolic Engineering of Clostridium acetobutylicum: Int J Mol Sci. Apr 2;22(7):3704. doi: 10.3390: /ijms22073704.
- Jin S, Bae J, Song Y, Pearcy N, Shin J, Kang S, Minton NP, Soucaille P, Cho BK 2020 Synthetic Biology on Acetogenic Bacteria for Highly Efficient Conversion of C1 Gases to Biochemicals Int J Mol Sci. 2020 Oct 15;21(20):7639. doi: 10.3390/ijms21207639.
- Yoo M, Nguyen NP, Soucaille P. 2020 Trends in Systems Biology for the Analysis and Engineering of Clostridium acetobutylicum Metabolism, Trends Microbiol., Feb;28(2):118-140, doi: 10.1016/j.tim.2019.09.003.
- Foulquier C, Huang CN, Nguyen NP, Thiel A, Wilding-Steel T, Soula J, Yoo M, Ehrenreich A, Meynial-Salles I, Liebl W, Soucaille P. 2019. An efficient method for markerless mutant generation by allelic exchange in Clostridium acetobutylicum and Clostridium saccharobutylicum using suicide vectors, Biotechnol. Biofuels, 12-31.
- Zhang Y, Ma C, Dischert W, Soucaille P, Zeng AP. 2019. Engineering of Phosphoserine Aminotransferase Increasesthe Conversion ofL‐Homoserine to4‐Hydroxy‐2‐ketobutyrate in a Glycerol‐Independent Pathway of 1,3‐Propanediol Production from Glucose, Biotechnology Journal DOI:10.1002/biot.201900003.
- Caserta, G., Papini, Adamska-Venkatesh, A., Pecqueur, L., Sommer, C., Reijerse, E., Lubitz, W., Gauquelin, C., Meynial Salles I., Pramanik, D., Artero, Atta, del Barrio, M., Faivre, Fourmond, Léger, Fontecave, M. 2018. Engineering an [FeFe]-Hydrogenase: Do Accessory Clusters Influence O2 Resistance and Catalytic Bias ? J. Am. Chem. Soc., 140 (16), 5516-5526
- Gauquelin C, Baffert C, Richaud P, Kamionka E, Etienne E, Guieysse D, Girbal L, Fourmond V, André I, Guigliarelli B, Léger C, Soucaille P, Meynial-Salles I. 2017 Roles of the F-domain in [FeFe] hydrogenase Biochim Biophys Acta. 2017. Aug 22. pii: S0005-2728(17)30129-9. doi: 10.1016/j.bbabio.2017.08.010.
- Nguyen, L. T. H., Raynaud, C., Meynial Salles, I., Soucaille, P. 2018. Reviving the Weizmann process for commercial n-butanol production. Nat. Commun., 9 (1), 8.
- Kubas A, Orain C, De Sancho D, Saujet L, Sensi M, Gauquelin C, Meynial-Salles I, Soucaille P, Bottin H, Baffert C, Fourmond V, Best RB, Blumberger J, Léger C. 2017. Mechanism of O2 diffusion and reduction in FeFe hydrogenases. Nat Chem. (1):88-95. doi: 10.1038/nchem.2592.
- Sensi M, Baffert C., Fradale L, Gauquelin C. , Soucaille P, Meynial-Salles I, Bottin H, De Gioia L., Bruschi M, Fourmond V, Leger C, Bertini L. 2017, Photoinhibition of FeFe hydrogenase, ACS Catalysis doi: 10.1021/acscatal.7b02252
- Yoo M, Croux C, Meynial-Salles I, Soucaille P 2017. Metabolic flexibility of a butyrate pathway mutant of Clostridium acetobutylicum. Metab Eng. pii: S1096-7176(17)30043-5. doi: 10.1016.
Croux C, Nguyen NP, Lee J, Raynaud C, Saint-Prix F, Gonzalez-Pajuelo M, Meynial-Salles I, Soucaille P. 2016. Construction of a restriction-less, marker-less mutant useful for functional genomic and metabolic engineering of the biofuel producer Clostridium acetobutylicum. Biotechnol. Biofuels. 9:23.
Nguyen NP, Linder S, Flitsch SK, Schiel-Bengelsdorf B, Dürre P, Soucaille P. 2016. Cap0037, a Novel Global Regulator of Clostridium acetobutylicum Metabolism, mBio Oct 4;7(5):e01218-16. doi: 10.1128/mBio.01218-16.
Rouvre I, Gauquelin C, Meynial-Salles I, Basseguy R. 2016. Impact of the chemicals, essential for the purification process of strict Fe-hydrogenase, on the corrosion of mild steel. Bioelectrochemistry. 109:9-23.
Sensi M, Baffert C, Greco C, Caserta G, Gauquelin C, Saujet L, Fontecave M, Roy S, Artero V, Soucaille P, Meynial-Salles I., Bottin H, de Gioia L, Fourmond V, Léger C, Bertini L. 2016. Reactivity of the Excited States of the H-Cluster of FeFe Hydrogenases. J. Am. Chem. Soc. Oct 6.
Yoo M, Croux C, Meynial-Salles I., Soucaille P. 2016. Elucidation of the roles of adhE1 and adhE2 in the primary metabolism of Clostridium acetobutylicum by combining in-frame gene deletion and a quantitative system-scale approach. Biotechnol. Biofuels. Apr 26;9:92.
- Heux S, Meynial-Salles I, O’Donohue MJ, Dumon C. 2015. White biotechnology: State of the art strategies for the development of biocatalysts for biorefining : Biotechnol. Adv. 1653-70.
- Orain C, Saujet L, Gauquelin C, Soucaille P, Meynial-Salles I, Baffert C, Fourmond V, Bottin H, Léger C. 2015. Electrochemical Measurements of the Kinetics of Inhibition of Two FeFe Hydrogenases by O2 Demonstrate That the Reaction Is Partly Reversible. J. Am. Chem. Soc. 12580-7.
- Ravachol J, Borne R, Meynial-Salles I, Soucaille P, Pagès S, Tardif C, Fierobe HP. 2015. Combining free and aggregated cellulolytic systems in the cellulosome-producing bacterium Ruminiclostridium cellulolyticum. Biotechnol. Biofuels. 114.
- Yoo M, Bestel-Corre G, Croux C, Riviere A, Meynial-Salles I, Soucaille P. 2015. A Quantitative System-Scale Characterization of the Metabolism of Clostridium acetobutylicum mBio. Nov 24;6.
- Fourmond V, Greco C, Sybirna K, Baffert C, Wang PH, Ezanno P, Montefiori M, Bruschi M, Meynial-Salles I, Soucaille P, Blumberger J, Bottin H, De Gioia L, Léger C. 2014. The oxidative inactivation of FeFe hydrogenase reveals the flexibility of the H-cluster, Nat. Chem. 336-342
- Dusséaux S, Croux C, Soucaille P, Meynial-Salles I. 2013. Metabolic engineering of Clostridium acetobutylicum ATCC 824 for the high-yield production of a biofuel composed of an isopropanol/butanol/ethanol mixture. Metab. Eng.,18,1-8.
- Fourmond V, Baffert C, Sybirna K, Lautier T, Abou Hamdan A, Dementin S, Soucaille P, Meynial-Salles I, Bottin H, Léger C. 2013. Steady-state catalytic wave-shapes for 2-electron reversible electrocatalysts and enzymes, J. Am. Chem. Soc., 135, 3926-38.
- Fourmond V, Baffert C, Sybirna K, Dementin S, Abou-Hamdan A, Meynial-Salles I, Soucaille P, Bottin H, Léger C. 2013. The mechanism of inhibition by H2 of H2-evolution by hydrogenases. Chem. Commun., 49:6840-2.
- Rafrafi, Y, Trably, E, Hamelin, J, Meynial-Salles, I , Benomar, S, Giudici-Orticoni, MT, Steyer, JP 2013 Sub-dominant bacteria as keystone species in microbial communities producing bio-hydrogen, Int. J. Hydrog. Energy. 38, 4975-4985.
- Baffert C, Sybirna K, Ezanno P, Lautier T, Hajj V, Meynial-Salles I, Soucaille P, Bottin H, Léger C. 2012. Covalent attachment of FeFe hydrogenases to carbon electrodes for direct electron transfer: Anal. Chem. 84, 7999-8005.
- Meynial-Salles, I. P Soucaille 2012. Creation of new metabolic pathways or improvement of existing metabolic enzymes by in vivo evolution in Escherichia coli: Methods Mol. Biol., 834, 75-86.
Patents
Soucaille P., Meynial-Salles I., Foulquier C., Rivière A. 2015. New polypeptide having ferredoxin NADP+ reductase activity polynucleotide encoding the same and uses thereof, European Patent application EP15306225.
Soucaille P., Nguyen T., Percheron B., Croux C., Meynial-Salles I. 2014. Hydrogenase negative mutants of solventogenic clostridia for the continuous production bulk chemicals and biofuels at high yield, PCT 70351D31746.