Delphine LABOURDETTE

Actual position and research subject

Advice for experimental design in microarray and sequencing

Analysis on NGS (New Generation Sequencing) data, RNA-seq, variant analysis, SingleCell RNAseq,

Microarray design and statistical analysis

2001

2000

1999

2001

2000

1999

Trainings on RNAseq analysis with command line or with Galaxy.

Initiation course on SingleCell RNAseq analysis

Linux and command line initiation

Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of human TCRVδ1 and TCRVδ2 γδ T lymphocytes.
Pizzolato G, Kaminski H, Tosolini M, Franchini DM, Pont F, Martins F, Valle C, Labourdette D, Cadot S, Quillet-Mary A, Poupot M, Laurent C, Ysebaert L, Meraviglia S, Dieli F, Merville P, Milpied P, Déchanet-Merville J, Fournié JJ.Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11906-11915. doi: 10.1073/pnas.1818488116. Epub 2019 May 22.PMID: 31118283

Multiomics Study of Bacterial Growth Arrest in a Synthetic Biology Application.
Ropers D, Couté Y, Faure L, Ferré S, Labourdette D, Shabani A, Trouilh L, Vasseur P, Corre G, Ferro M, Teste MA, Geiselmann J, de Jong H.ACS Synth Biol. 2021 Nov 19;10(11):2910-2926. doi: 10.1021/acssynbio.1c00115. Epub 2021 Nov 5.PMID: 34739215
miR-497 suppresses cycle progression through an axis involving CDK6 in ALK-positive cells.
Hoareau-Aveilla C, Quelen C, Congras A, Caillet N, Labourdette D, Dozier C, Brousset P, Lamant L, Meggetto F.Haematologica. 2019 Feb;104(2):347-359. doi: 10.3324/haematol.2018.195131. Epub 2018 Sep 27.PMID: 30262555

A conserved mechanism drives partition complex assembly on bacterial chromosomes and plasmids.
Debaugny RE, Sanchez A, Rech J, Labourdette D, Dorignac J, Geniet F, Palmeri J, Parmeggiani A, Boudsocq F, Anton Leberre V, Walter JC, Bouet JY.Mol Syst Biol. 2018 Nov 16;14(11):e8516. doi: 10.15252/msb.20188516.PMID: 30446599 Free PMC article.

Dynamic transcriptomic analysis of Ischemic Injury in a Porcine Pre-Clinical Model mimicking Donors Deceased after Circulatory Death.
Giraud S, Steichen C, Allain G, Couturier P, Labourdette D, Lamarre S, Ameteau V, Tillet S, Hannaert P, Thuillier R, Hauet T.Sci Rep. 2018 Apr 13;8(1):5986. doi: 10.1038/s41598-018-24282-6.PMID: 29654283 Free PMC article.

CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems.
Abot A, Arnal G, Auer L, Lazuka A, Labourdette D, Lamarre S, Trouilh L, Laville E, Lombard V, Potocki-Veronese G, Henrissat B, O’Donohue M, Hernandez-Raquet G, Dumon C, Leberre VA.BMC Genomics. 2016 Aug 23;17(1):671. doi: 10.1186/s12864-016-2988-4.PMID: 27552843 Free PMC article.

Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size.
Lamarre S, Frasse P, Zouine M, Labourdette D, Sainderichin E, Hu G, Le Berre-Anton V, Bouzayen M, Maza E.Front Plant Sci. 2018 Feb 14;9:108. doi: 10.3389/fpls.2018.00108. eCollection 2018.PMID: 29491871 Free PMC article.

Fuzzy logic selection as a new reliable tool to identify molecular grade signatures in breast cancer–the INNODIAG study.
Kempowsky-Hamon T, Valle C, Lacroix-Triki M, Hedjazi L, Trouilh L, Lamarre S, Labourdette D, Roger L, Mhamdi L, Dalenc F, Filleron T, Favre G, François JM, Le Lann MV, Anton-Leberre V.BMC Med Genomics. 2015 Feb 7;8:3. doi: 10.1186/s12920-015-0077-1.PMID: 25888889 Free PMC article.

Integration of transcriptomic and metabolic analyses for understanding the global responses of low-temperature winemaking fermentations.
Beltran G, Novo M, Leberre V, Sokol S, Labourdette D, Guillamon JM, Mas A, François J, Rozes N.FEMS Yeast Res. 2006 Dec;6(8):1167-83. doi: 10.1111/j.1567-1364.2006.00106.x.PMID: 17156014 Free article.

Genome-wide analysis of the response to cell wall mutations in the yeast Saccharomyces cerevisiae.
Lagorce A, Hauser NC, Labourdette D, Rodriguez C, Martin-Yken H, Arroyo J, Hoheisel JD, François J.J Biol Chem. 2003 May 30;278(22):20345-57. doi: 10.1074/jbc.M211604200. Epub 2003 Mar 18.PMID: 12644457