Production scientifique

• Elodie Bascans, Etienne Séverac, David Guieysse, Marion Claverie, Sylvie Blanc, Magali Remaud-Simeon, Susana C.M. Fernandes, Claire Moulis, Engineered mycosporine-based glucoconjugates by enzymatic cascade: Towards innovative ultraviolet filters and antioxidant compounds, Bioresource Technology, Volume 433, 2025, 132721, ISSN 0960-8524, https://doi.org/10.1016/j.biortech.2025.132721
• MARTINEZ-MENENDEZ I., ACOSTA-PAVAS J., CORRALES D. C., VILLELA S. M. A., BOUHAOUALA-ZAHAR B., GEORGAKILAS G., MEXIS K., XENIOS S., DALAMAGAS T., KOKOSIS A., ODONOHUE M., FILLAUDEAU L., BOUKHELIFA N., TONDA A., ACEVES-LARA C. Comparison of Machine Learning-Enhanced Dynamic Hybrid Models for a Nanobody Scorpion Antivenom Production with Escherichia Coli, Lecture Notes in Networks and Systems, 2025 http://doi.org/10.1007/978-3-031-82073-1_30
• SZLEPER K., CEBULA M., KOVALENKO O., GORA A., RACZYNSKA A., PUR-GEN: A web server for automated generation of polyurethane fragment libraries, Computational and Structural Biotechnology Journal, 2025 http://doi.org/10.1016/j.csbj.2024.12.004
• BARTHE L., BALESTRINO D., AZIZI B., DESSAUX D., SOLDAN V., ESQUE J., SCHIEX T., BARBE S., GARCIA-ALLES L.Promiscuous structural cross-compatibilities between major shell components of Klebsiella pneumoniae bacterial microcompartments, PLoS ONE, http://doi.org/10.1371/journal.pone.0322518
• ARTICO M., FORMOSA-DAGUE C., KAMAK D., PERUCH F., MINGOTAUD A.-F., ROUX C., MONTANIER C. One-point covalent immobilization of a xylanase on elastomer: effects of surface stretching on enzymatic activity , Applied Surface Science, 2025 http://doi.org/10.1016/j.apsusc.2025.163554
• ANCELIN M., MARTINS DOS SANTOS V., MORRISSEY J., ODONOHUE M. J., PENTTILA M., PHILP J. Addressing semantic ambiguity in biotechnology: Proposals from the European research infrastructure IBISBA, New Biotechnology, 2025, http://doi.org/10.1016/j.nbt.2025.04.010
• ALBANESE K., BARBE S., TAGAMI S., WOOLFSON D., SCHIEX T. Computational Protein Design, Nature Reviews Methods Primers, 2025 http://doi.org/10.1038/s43586-025-00383-1
• ACOSTA-PAVAS J., CORRALES D. C., MARTINEZ-MENENDEZ I., VILLELA S. M. A., BOUHAOUALA-ZAHAR B., GEORGAKILAS G., MEXIS K., XENIOS S., DALAMAGAS T., KOKOSIS A., ODONOHUE M., FILLAUDEAU L., ACEVES-LARA C. , A Soft Sensing Approach for Efficient Monitoring of Nanobody-Based Scorpion Antivenom Production, PLoS Pathogens, 2025, http://doi.org/10.1007/978-3-031-82073-1_27
• SCIPION Clement, ESQUE Jérémy, BORKAR Shreyash, ONG Jing Sen, SEAH Cristalle, ONG Leonard, NG Pnelope, KANAGASUNDARAM Yoganathan, REMAUD-SIMEON Magali, BOZONNET Sophie, XUE Bo, YEW Wen Shan, ANDRÉ Isabelle*, CHEN Xixian* Enhanced Production of (+)-Limonene through Targeted Engineering of Citrus sinensis Limonene Synthase, ACS Synthetic Biology , 2025, https://doi.org/10.1021/acssynbio.5c00078
• SCIPION Clement, ESQUE Jérémy, BORKAR Shreyash, SEAH Cristalle, BOZONNET Sophie, REMAUD-SIMÉON Magali, XUE Bo, YEW Wen Shan, ANDRÉ Isabelle*, CHEN Xixian*, Exploring Natural Diversity of Limonene Synthases and Molecular Determinants Involved in Substrate Specificity in Escherichia coli. , J. Agri. Food Chem. 2025, https://doi.org/10.1021/acs.jafc.5c01640

• RACZYńSKA A. (2024). Highlights from the Biocatalysis Faraday Discussion, May 2024, London, United Kingdom. Chemical Communications, 60 (76), 10431-10438, 10.1039/d4cc90306d, https://hal.archives-ouvertes.fr/hal-04818919
• MOUAWAD L., ESQUE J., ANDRE I., ISTAMBOULIE G., CATANANTE G., NOGUER T. (2024-10-19). Evaluating cholinesterases inhibition by BAC and DDAC biocides: A combined experimental and theoretical approach. Biochimica et Biophysica Acta:Biomembranes, , 10.1016/j.bbagen.2024.130726, https://hal.archives-ouvertes.fr/hal-04757302
• RACZYńSKA A., GORA A., ANDRE I. (2024-12). An overview on polyurethane-degrading enzymes. Biotechnology Advances, 77, 108439, 10.1016/j.biotechadv.2024.108439, https://hal.archives-ouvertes.fr/hal-04739428
• LAUNAY R., CHOBERT S.-C., ABBY S., PIERREL F., ANDRE I., ESQUE J. (2024-05-06). Structural Reconstruction of E. coli Ubi Metabolon Using an AlphaFold2-Based Computational Framework. Journal of Chemical Information and Modeling, 64 (13), 5175-5193, 10.1021/acs.jcim.4c00304, https://hal.archives-ouvertes.fr/hal-04662598
• O’DONOHUE M. J. (2024-08-06). Biotech potential set to soar with the help of digital technology. Horizon Magazine, , https://projects.research-and-innovation.ec.europa.eu/en/horizon-magazine/biotech-potential-set-soar-help-digital-technology#linkedin, https://hal.archives-ouvertes.fr/hal-04727153
• HAMELEERS L., PIJNING T., GRAY B., FAURE R., JURAK E. (2024-05). Novel β-galactosidase activity and first crystal structure of Glycoside Hydrolase family 154. New Biotechnology, 80, 1-11, 10.1016/j.nbt.2023.12.011, https://hal.archives-ouvertes.fr/hal-04670505
• KOSCHELLA A., HEINZE T., SEVERAC E., MOULIS C. (2024-11). Regioselective thexyldimethylsilylation of (1➔3)-glucans – Does the linkage type matter. Carbohydrate Polymers, 343, 122439, 10.1016/j.carbpol.2024.122439, https://hal.archives-ouvertes.fr/hal-04779316
• ALBANESE K., BARBE S., WOOLFSON D., TAGAMI S., SCHIEX T. (2024). Computational Protein Design. Nature Reviews Methods Primers, , https://hal.archives-ouvertes.fr/hal-04855220
• MACCOW A., KULYK H., SEVERAC E., MOREL S., MOULIS C., BOISSONNAT G., REMAUD-SIMEON M., GUIEYSSE D. (2024-08). A chemo-enzymatic pathway to expand cellooligosaccharide chemical space through amine bond introduction. Carbohydrate Polymers, 338, 122168, 10.1016/j.carbpol.2024.122168, https://hal.archives-ouvertes.fr/hal-04669065
• GUICHERD M., BEN KHALED M., GUEROULT M., NOMME J., DALIBEY M., GRIMAUD F., ALVAREZ P., KAMIONKA E., GAVALDA S., NOEL M., VUILLEMIN M., AMILLASTRE E., LABOURDETTE D., CIOCI G., TOURNIER V., KITPREECHAVANICH V., DUBOIS P., ANDRE I., DUQUESNE S., MARTY A. (2024-07-17). An engineered enzyme embedded into PLA to make self-biodegradable plastic. Nature, 631 (8022), 884-890, 10.1038/s41586-024-07709-1, https://hal.archives-ouvertes.fr/hal-04725518
• CHARLIER C., GAVALDA S., GRGA J., PERROT L., GABRIELLI V., LOHR F., SCHORGHUBER J., LICHTENECKER R., ARNAL G., MARTY A., TOURNIER V., LIPPENS G. (2024). Exploring the pH dependence of an improved PETase. Biophysical Journal, , 10.1016/j.bpj.2024.04.026, https://hal.archives-ouvertes.fr/hal-04569437
• LI X., LIPPENS G., PARROU J.-L., CIOCI G., ESQUE J., WANG Z., LAVILLE E., POTOCKI-VERONESE G., LABOUREL A. (2024-08-28). Biochemical characterization of a SusD-like protein involved in β-1,3-glucan utilization by an uncultured cow rumen Bacteroides. MSphere, 9 (8), 10.1128/msphere.00278-24, https://hal.archives-ouvertes.fr/hal-04743213

• T. R., LI X., ONG J. S., ESQUE J., ZHANG C., LIN Q., ANDRE I., CHEN X. (2023-06-07). Mutagenesis of Dimer Interfacial Residues Improves the Activity and Specificity of Methyltransferase for cis -α-Irone Biosynthesis. Journal of Agricultural and Food Chemistry, 71 (22), 8497-8507, 10.1021/acs.jafc.3c01272, https://hal.archives-ouvertes.fr/hal-04251978
• BARBA-CEDILLO V., MONTANIER C. (2023-02-06). Effect of multi-modularity and spatial organization of glycoside hydrolases on catalysis. Essays in Biochemistry, 67 (3), 629-638, 10.1042/EBC20220167, https://hal.archives-ouvertes.fr/hal-04038640
• TOURNIER V., DUQUESNE S., GUILLAMOT F., CRAMAIL H., TATON D., MARTY A., ANDRE I. (2023). Enzymes’ Power for Plastics Degradation. Chemical Reviews, 123 (9), 5612-5701, 10.1021/acs.chemrev.2c00644, https://hal.archives-ouvertes.fr/hal-04150645
• KHAMASSI A., DUMON C. (2023-04-18). Enzyme synergy for plant cell wall polysaccharide degradation. Essays in Biochemistry, 67 (3), 521-531, 10.1042/EBC20220166, https://hal.archives-ouvertes.fr/hal-04116715
• TELETCHEA S., ESQUE J., URBAIN A., ETCHEBEST C., DE BREVERN A. (2023-04-06). Evaluation of Transmembrane Protein Structural Models Using HPMScore. BioMedInformatics, 3 (2), 306 – 326, 10.3390/biomedinformatics3020021, https://hal.archives-ouvertes.fr/hal-04813790
• BORA P. K., KEMPRAI P., HUSSAIN S., BAISHYA R., JADHAV D., HALDAR S. (2023-11-20). Mushroom‐based biocatalysts for the synthesis of aroma and flavours from exogenous organic molecules: a review of two decades. International Journal of Food Science and Technology, 59 (1), 84-94, 10.1111/ijfs.16829, https://hal.archives-ouvertes.fr/hal-04664497
• MOHAMAD ALI D., HOGEVEEN K., ORHANT R.-M., LE GAL DE KERANGAL T., ERGAN F., ULMANN L., PENCREACH G. (2023-04-29). Lysophosphatidylcholine-DHA Specifically Induces Cytotoxic Effects of the MDA-MB-231 Human Breast Cancer Cell Line In Vitro—Comparative Effects with Other Lipids Containing DHA. Nutrients, 15 (9), 2137, 10.3390/nu15092137, https://hal.archives-ouvertes.fr/hal-04092785
• LABOUREL A., PARROU J.-L., DERAISON C., MERCIER-BONIN M., LAJUS S., POTOCKI-VERONESE G. (2023-03-27). O -Mucin-degrading carbohydrate-active enzymes and their possible implication in inflammatory bowel diseases. Essays in Biochemistry, , 10.1042/EBC20220153, https://hal.archives-ouvertes.fr/hal-04048006
  Grégory Arnal, Julien Anglade, Sabine Gavalda, Vincent Tournier, Nicolas Chabot, et al.. Assessment of Four Engineered PET Degrading Enzymes Considering Large-Scale Industrial Applications. ACS Catalysis, 2023, 13 (20), pp.13156-13166. ⟨10.1021/acscatal.3c02922⟩
• LAFFARGUE T., REMAUD-SIMEON M., MOULIS C. (2023-07). Phosphorylated polysaccharides: Applications, natural abundance, and new-to-nature structures generated by chemical and enzymatic functionalisation. Biotechnology Advances, 65, 108140, 10.1016/j.biotechadv.2023.108140, https://hal.archives-ouvertes.fr/hal-04848454
• MALLINSON S., DESSAUX D., BARBE S., BOMBLE Y. (2023). Computer-Aided Engineering of a Non-Phosphorylating Glyceraldehyde-3-Phosphate Dehydrogenase to Enable Cell-Free Biocatalysis. ACS Catalysis, 13 (17), 11781-11797, 10.1021/acscatal.3c01452, https://hal.archives-ouvertes.fr/hal-04222735
• ZUBLIN P., ZELLER A., MOULIS C., REMAUD-SIMEON M., YAO Y., MEZZENGA R. (2023-11-29). Expanding the Enzymatic Polymerization Landscape by Lipid Mesophase Soft Nanoconfinement. Angewandte Chemie International Edition, 63 (1), 10.1002/anie.202312880, https://hal.archives-ouvertes.fr/hal-04648232
• ALFONSO-PRIETO M., CUXART I., POTOCKI-VERONESE G., ANDRE I., ROVIRA C. (2023). Substrate-Assisted Mechanism for the Degradation of N-glycans by a Gut Bacterial Mannoside Phosphorylase. ACS Catalysis, 13 (7), 4283, 10.1021/acscatal.3c00451, https://hal.archives-ouvertes.fr/hal-04213058
• SICARD J., BARBE S., BOUTROU R., BOUVIER L., DELAPLACE G., LASHERMES G., THERON L., VITRAC O., TONDA A. (2023-03-17). A primer on predictive techniques for food and bioresources transformation processes. Journal of Food Process Engineering, , 10.1111/jfpe.14325, https://hal.archives-ouvertes.fr/hal-04040429
• KUROIWA K., DANILO B., PERROT L., THENAULT C., VEILLET F., DELACOTE F., DUCHATEAU P., NOGUE F., MAZIER M., GALLOIS J.-L. (2023-05). An iterative gene-editing strategy broadens eIF4E1 genetic diversity in Solanum lycopersicum and generates resistance to multiple potyvirus isolates. Plant Biotechnology Journal, 21 (5), 918-930, 10.1111/pbi.14003, https://hal.archives-ouvertes.fr/hal-03979930
• GARDIN A., ROUILLON J., MONTALVO-ROMERAL V., ROSSIAUD L., VIDAL P., LAUNAY R., VIE M., KRIMI BENCHEKROUN Y., COSETTE J., BERTIN B., LA BELLA T., DUBREUIL G., NOZI J., JAUZE L., FRAGNOUD R., DANIELE N., VAN WITTENBERGHE L., ESQUE J., ANDRE I., NISSAN X., HOCH L., RONZITTI G. (2023). A functional mini-GDE transgene corrects impairment in models of glycogen storage disease type III. The Journal of clinical investigation, 134 (2), e172018, 10.1172/JCI172018, https://hal.archives-ouvertes.fr/hal-04387513
• NIN-HILL A., PINIELLO B., ROVIRA C. (2023-04-18). In silico modelling of the function of disease-related CAZymes. Essays in Biochemistry, 67 (3), 355-372, 10.1042/EBC20220218, https://hal.archives-ouvertes.fr/hal-04288582
• MONTESANTI N., LANCELON-PIN C., POTOCKI-VERONESE G., BULEON A., PUTAUX J.-L. (2023). A-amylose single crystals: influence of amylose concentration, crystallization temperature and surface induction on the crystal morphology. Cellulose, 30 (13), 8459-8473, 10.1007/s10570-023-05387-2, https://hal.archives-ouvertes.fr/hal-04195422
• NAN Z., FLOQUET P., COMBES D., TENDERO C., CASTELAIN M. (2023-11-30). Surface Conditioning Effects on Submerged Optical Sensors: A Comparative Study of Fused Silica, Titanium Dioxide, Aluminum Oxide, and Parylene C. Sensors, 23 (23), 9546, 10.3390/S23239546, https://hal.archives-ouvertes.fr/hal-04350817
• RAMOS N., BIGOT D.-J., ZEDER-LUTZ G., STRUB J.-M., DAGKESAMANSKAYA A., FAURE R., NOUAILLE S., MONTANIER C., FERRY G., WAGNER R., CIANFERANI S., BOUTIN J., TRUAN G. (2023). Genetic Incorporation of Non-canonical Amino Acids in Anti-HER2 VHH: Expression and Characterization. Nanoarchitectonics, 5 (1), 24 – 42, 10.37256/nat.5120243482, https://hal.archives-ouvertes.fr/hal-04201664
• TAUZIN A., WANG Z., CIOCI G., LI X., LABOUREL A., MACHADO B., LIPPENS G., POTOCKI-VERONESE G. (2023-02-05). Structural and Biochemical Characterization of a Nonbinding SusD-Like Protein Involved in Xylooligosaccharide Utilization by an Uncultured Human Gut <i>Bacteroides</i> Strain. MSphere, 7 (5), 10.1128/msphere.00244-22, https://hal.archives-ouvertes.fr/hal-03796391
• AUER E., LAZUKA A., HUGUENIN-BIZOT B., JEHMLICH N., DEJEAN S., LOMBARD V., HENRISSAT B., O’DONOHUE M., HERNANDEZ-RAQUET G. (2023). Horizontal metaproteomics and CAZymes analysis of lignocellulolytic microbial consortia selectively enriched from cow rumen and termite gut. Isme Communications, 3, 134, 10.1038/s43705-023-00339-0, https://hal.archives-ouvertes.fr/hal-04844011
• ARTICO M., ROUX C., PERUCH F., MINGOTAUD A.-F., MONTANIER C. (2023). Grafting of proteins onto polymeric surfaces: A synthesis and characterization challenge. Biotechnology Advances, 64, 108106, 10.1016/j.biotechadv.2023.108106, https://hal.archives-ouvertes.fr/hal-03989258
• PETERMANN M., DIANTEILL L., ZEIDI A., VAHA OULOASSEKPA R., BUDISAVLJEVIC P., LE MEN C., MONTANIER C., ROBLIN P., CABANE B., SCHWEINS R., DUMON C., BOUCHOUX A. (2023-08-14). Arabinoxylan in Water through SANS: Single-Chain Conformation, Chain Overlap, and Clustering. Biomacromolecules, 24 (8), 3619-3628, 10.1021/acs.biomac.3c00374, https://hal.archives-ouvertes.fr/hal-04225419
• BLOSSE S., BOUCHOUX A., MONTANIER C., DURU P. (2023). X-ray microtomography reveals the 3D enzymatic deconstruction pathway of raw lignocellulosic biomass. Bioresource Technology Reports, 21, 101351, 10.1016/j.biteb.2023.101351, https://hal.archives-ouvertes.fr/hal-04038634

• MONSCHEIN M., JURAK E., PAASELA T., KOITTO T., LAMBAUER V., PAVICIC M., ENJALBERT T., DUMON C., MASTER E. (2022-12). PACER: a novel 3D plant cell wall model for the analysis of non-catalytic and enzymatic responses. Biotechnology for Biofuels and Bioproducts, 15 (1), 10.1186/s13068-022-02128-8, https://hal.archives-ouvertes.fr/hal-03828616
• BOUCHIBA Y., ESQUE J., COTTRET L., MARECHAUX M., GASTON M., GASCIOLLI V., KELLER J., NOUWEN N., GULLY D., ARRIGHI J., GOUGH C., LEFEBVRE B., BARBE S., BONO J. (2022-06). An integrated approach reveals how lipo‐chitooligosaccharides interact with the lysin motif receptor‐like kinase MtLYR3. Protein Science, 31 (6), 17 p., 10.1002/pro.4327, https://hal.archives-ouvertes.fr/hal-03684572
• CHEN X., T R., ESQUE J., ZHANG C., SHUKAL S., LIM C. C., ONG L., SMITH D., ANDRE I. (2022-12-02). Total enzymatic synthesis of cis-α-irone from a simple carbon source. Nature Communications, 13 (1), 7421, 10.1038/s41467-022-35232-2, https://hal.archives-ouvertes.fr/hal-04248225
• GUO Z., WANG L., SU L., CHEN S., XIA W., ANDRE I., ROVIRA C., WANG B., WU J. (2022). A Single Hydrogen Bond Controls the Selectivity of Transglycosylation vs Hydrolysis in Family 13 Glycoside Hydrolases. Journal of Physical Chemistry Letters, 13 (24), 5626-5632, 10.1021/acs.jpclett.2c01136, https://hal.archives-ouvertes.fr/hal-03758367
• VEETTIL U., OLZA S., BASCANS E., CASTEJON N., ADRIEN A., FERNANDEZ-MARIN R., NARDIN C., FERNANDES S. C., BRUGEROLLE DE FRAISSINETTE N. (2022-04). Contributions of Women in Recent Research on Biopolymer Science. Polymers, 14 (7), 1420, 10.3390/polym14071420, https://hal.archives-ouvertes.fr/hal-03654896
• LE C. A. K., OGAWA Y., GRIMAUD F., NISHIYAMA Y., MORFIN I., POTOCKI-VERONESE G., CHOISNARD L., WOUESSIDJEWE D., PUTAUX J.-L. (2022). Helical Inclusion Complexes of Amylose with Aromatic Compounds: Crystallographic Evidence for New V-Type Allomorphs. Crystal Growth & Design, 22 (12), 7079-7089, 10.1021/acs.cgd.2c00771, https://hal.archives-ouvertes.fr/hal-03880380
• PERCHAT N., DUBOIS C., MOR-GAUTIER R., DUQUESNE S., LECHAPLAIS C., ROCHE D., FOUTEAU S., DARII E., PERRET A. (2022-05-24). Characterization of a novel β-alanine biosynthetic pathway consisting of promiscuous metabolic enzymes. Journal of Biological Chemistry, 298 (7), 10.1016/j.jbc.2022.102067, https://hal.archives-ouvertes.fr/hal-03822699
• MOLINA M., PREVITALI T., MOULIS C., CIOCI G., REMAUD-SIMEON M. (2022-01-01). The role of the C domain in the thermostability of GH70 enzymes investigated by domain swapping. Amylase, 6 (1), 11-19, 10.1515/amylase-2022-0002, https://hal.archives-ouvertes.fr/hal-04779275
• LAUNAY R., TEPPA E., MARTINS C., ABBY S., PIERREL F., ANDRE I., ESQUE J. (2022-09). Towards Molecular Understanding of the Functional Role of UbiJ-UbiK2 Complex in Ubiquinone Biosynthesis by Multiscale Molecular Modelling Studies. International Journal of Molecular Sciences, 23 (18), 10.3390/ijms231810323, https://hal.archives-ouvertes.fr/hal-03800688
• WANG Z., TAUZIN A., LAVILLE E., POTOCKI-VERONESE G. (2022-03-25). Identification of Glycoside Transporters From the Human Gut Microbiome. Frontiers in Microbiology, 13, 10.3389/fmicb.2022.816462, https://hal.archives-ouvertes.fr/hal-03702875
• ROPARTZ D., FANUEL M., OLLIVIER S., LISSARRAGUE A., BENKOULOUCHE M., MULARD L., ANDRE I., GUIEYSSE D., ROGNIAUX H. (2022-02-01). Combination of High-Resolution Multistage Ion Mobility and Tandem MS with High Energy of Activation to Resolve the Structure of Complex Chemoenzymatically Synthesized Glycans. Analytical Chemistry, 94 (4), 2279-2287, 10.1021/acs.analchem.1c04982, https://hal.archives-ouvertes.fr/hal-03573196
• PENTTINEN L., KOUHI V., FAURE R., SKARINA T., STOGIOS P., MASTER E., JURAK E. (2022). Elucidating Sequence and Structural Determinants of Carbohydrate Esterases for Complete Deacetylation of Substituted Xylans. Molecules, 27 (9), 10.3390/molecules27092655, https://hal.archives-ouvertes.fr/hal-03813274
• DESSAUX D., MATHE J., RAMIREZ R., BASDEVANT N. (2022-06-16). Current Rectification and Ionic Selectivity of α-Hemolysin: Coarse-Grained Molecular Dynamics Simulations. Journal of Physical Chemistry B, 126 (23), 4189-4199, 10.1021/acs.jpcb.2c01028, https://hal.archives-ouvertes.fr/hal-03838328
• DUQUESNE S., TOURNIER V. (2022-05-29). Le recyclage enzymatique du PET. L’Actualité Chimique, (473-474), 94-97, https://hal.archives-ouvertes.fr/hal-04831149
• PERROT N., DESSAUX D., RIGNANI A., GILLET C., ORLOWSKI S., JAMIN N., GARRIGOS M., JAXEL C. (2022-08). Caveolin-1β promotes the production of active human microsomal glutathione S-transferase in induced intracellular vesicles in $Spodoptera\ frugiperda$ insect cells. Biochimica et Biophysica Acta:Biomembranes, 1864 (8), 183922, 10.1016/j.bbamem.2022.183922, https://hal.archives-ouvertes.fr/hal-03653737
• ELALAMI D., AOUINE M., MONLAU F., GUILLON F., DUMON C., HERNANDEZ RAQUET G., BARAKAT A. (2022-06-29). Enhanced enzymatic hydrolysis of corn stover using twin‐screw extrusion under mild conditions. Biofuels, Bioproducts & Biorefining, 16 (6), 1642-1654, 10.1002/bbb.2400, https://hal.archives-ouvertes.fr/hal-03719965
• LI A., BENKOULOUCHE M., LADEVEZE S., DURAND J., CIOCI G., LAVILLE E., POTOCKI-VERONESE G. (2022-03). Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases. International Journal of Molecular Sciences, 23 (6), 10.3390/ijms23063043, https://hal.archives-ouvertes.fr/hal-03640987
• CHARLIER C., GAVALDA S., BORSENBERGER V., DUQUESNE S., MARTY A., TOURNIER V., LIPPENS G. (2022). An NMR look at an engineered PET depolymerase. Biophysical Journal, 121 (15), 2882-2894, 10.1016/j.bpj.2022.07.002, https://hal.archives-ouvertes.fr/hal-03739009

• BOUCHIBA Y., CORTES J., SCHIEX T., BARBE S. (2021-05). Molecular flexibility in computational protein design: an algorithmic perspective. Protein Engineering, Design and Selection, 34, gzab011, 10.1093/protein/gzab011, https://hal.archives-ouvertes.fr/hal-03221838
• LE C. A. K., OGAWA Y., DUBREUIL F., GRIMAUD F., MAZEAU K., ZIEGLER G., TANWAR S., NISHIYAMA Y., POTOCKI-VERONESE G., CHOISNARD L., WOUESSIDJEWE D., PUTAUX J.-L. (2021-06). Crystal and molecular structure of V-amylose complexed with ibuprofen. Carbohydrate Polymers, 261, 117885, 10.1016/j.carbpol.2021.117885, https://hal.archives-ouvertes.fr/hal-03167743
• BOUDSOCQ F., SALHI M., BARBE S., BOUET J.-Y. (2021-09). Three ParA Dimers Cooperatively Assemble on Type Ia Partition Promoters. Genes, 12 (9), 10.3390/genes12091345, https://hal.archives-ouvertes.fr/hal-03358090
• TEZE D., ZHAO J., WIEMANN M., ZUBAIDA GULSHAN ARA K., LUPO R., ZEUNER B., VUILLEMIN M., RONNE M., CARLSTROM G., DUUS J., SANEJOUAND Y.-H., O’DONOHUE M., NORDBERG-KARLSSON E., FAURE R., STALBRAND H., SVENSSON B. (2021). Rational enzyme design without structural knowledge: a sequence-based approach for efficient generation of transglycosylases. Chemistry – A European Journal, , 10.1002/chem.202100110, https://hal.archives-ouvertes.fr/hal-02906907
• HERRERA-GONZALEZ A., NUNEZ-LOPEZ G., NUNEZ-DALLOS N., AMAYA-DELGADO L., SANDOVAL G., REMAUD-SIMEON M., MOREL S., ARRIZON J., HERNANDEZ L. (2021-06). Enzymatic synthesis of phlorizin fructosides. Enzyme and Microbial Technology, 147, 10.1016/j.enzmictec.2021.109783, https://hal.archives-ouvertes.fr/hal-03260524
• DESMONS S., GRAYSON-STEEL K., NUNEZ-DALLOS N., VENDIER L., HURTADO J., CLAPES P., FAURE R., DUMON C., BONTEMPS S. (2021). Enantioselective Reductive Oligomerization of Carbon Dioxide into l -Erythrulose via a Chemoenzymatic Catalysis. Journal of the American Chemical Society, 143 (39), 16274-16283, 10.1021/jacs.1c07872, https://hal.archives-ouvertes.fr/hal-03358019
• ZHAO J., TANDRUP T., BISSARO B., BARBE S., POULSEN J.-C., ANDRE I., DUMON C., LO LEGGIO L., O’DONOHUE M., FAURE R. (2021). Probing the determinants of the transglycosylation/hydrolysis partition in a retaining α-l-arabinofuranosidase. New Biotechnology, 62, 68-78, 10.1016/j.nbt.2021.01.008, https://hal.archives-ouvertes.fr/hal-03139105
• BENKOULOUCHE M., BEN IMEDDOURENE A., BAREL L.-A., LEFEBVRE D., FANUEL M., ROGNIAUX H., ROPARTZ D., BARBE S., GUIEYSSE D., MULARD L., REMAUD-SIMEON M., MOULIS C., ANDRE I. (2021-10-13). Computer-aided engineering of a branching sucrase for the glucodiversification of a tetrasaccharide precursor of S. flexneri antigenic oligosaccharides. Scientific Reports, 11 (1), 10.1038/s41598-021-99384-9, https://hal.archives-ouvertes.fr/hal-03382404
• YAGI S., PADHI A., VUCINIC J., BARBE S., SCHIEX T., NAKAGAWA R., SIMONCINI D., ZHANG K., TAGAMI S. (2021). Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. Journal of the American Chemical Society, 143 (39), 15998-16006, 10.1021/jacs.1c05367, https://hal.archives-ouvertes.fr/hal-03360584
• RUFFINI M., VUCINIC J., GIVRY S. D., KATSIRELOS G., BARBE S., SCHIEX T. (2021-06). Guaranteed Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. Algorithms, 14 (6), 168, 10.3390/a14060168, https://hal.archives-ouvertes.fr/hal-03244149
• DEFRESNE M., BARBE S., SCHIEX T. (2021-11). Protein Design with Deep Learning. International Journal of Molecular Sciences, 22 (21), 10.3390/ijms222111741, https://hal.archives-ouvertes.fr/hal-03602603
  105245
• PETIT D., TEPPA R. E., HARDUIN-LEPERS A. (2021). A phylogenetic view and functional annotation of the animal β1,3-glycosyltransferases of the GT31 CAZy family. Glycobiology, 31 (3), 243-259, 10.1093/glycob/cwaa086, https://hal.archives-ouvertes.fr/hal-02963114
• OLLIVIER S., TARQUIS L., FANUEL M., LI A., DURAND J., LAVILLE E., POTOCKI-VERONESE G., ROPARTZ D., ROGNIAUX H. (2021-04-20). Anomeric Retention of Carbohydrates in Multistage Cyclic Ion Mobility (IMS n ): De Novo Structural Elucidation of Enzymatically Produced Mannosides. Analytical Chemistry, 93 (15), 6254-6261, 10.1021/acs.analchem.1c00673, https://hal.archives-ouvertes.fr/hal-03250619
• HAMELEERS L., PENTTINEN L., IKONEN M., JAILLOT L., FAURE R., TERRAPON N., DEUSS P., HAKULINEN N., MASTER E., JURAK E. (2021-12). Polysaccharide utilization loci-driven enzyme discovery reveals BD-FAE: a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylans. Biotechnology for Biofuels, 14 (1), 10.1186/s13068-021-01976-0, https://hal.archives-ouvertes.fr/hal-03270620
• VUCINIC J., NOVIKOV G., MONTANIER C., DUMON C., SCHIEX T., BARBE S. (2021-06). A Comparative Study to Decipher the Structural and Dynamics Determinants Underlying the Activity and Thermal Stability of GH-11 Xylanases. International Journal of Molecular Sciences, 22 (11), 10.3390/ijms22115961, https://hal.archives-ouvertes.fr/hal-03244138
• MOULIS C., GUIEYSSE D., MOREL S., SEVERAC E., REMAUD-SIMEON M. (2021-04). Natural and engineered transglycosylases: Green tools for the enzyme-based synthesis of glycoproducts. Current Opinion in Chemical Biology, 61, 96-106, 10.1016/j.cbpa.2020.11.004, https://hal.archives-ouvertes.fr/hal-03260490
• PARK Y. K., BORDES F., LETISSE F., NICAUD J.-M. (2021-06-30). Engineering precursor pools for increasing production of odd-chain fatty acids in Yarrowia lipolytica. Metabolic Engineering Communications, 12, 10.1016/j.mec.2020.e00158, https://hal.archives-ouvertes.fr/hal-03493345
• ARABACIYAN S., SAINT-ANTOINE M., MAUGIS-RABUSSEAU C., FRANCOIS J. M., SINGH A., PARROU J.-L., CAPP J.-P. (2021-01-28). Insights on the control of yeast single-cell growth variability by members of the Trehalose Phosphate Synthase (TPS) complex. Frontiers in Cell and Developmental Biology, 9, 10.3389/fcell.2021.607628, https://hal.archives-ouvertes.fr/hal-03098577
• BADRUNA L., BURLAT V., ROBLIN P., ENJALBERT T., LIPPENS G., VENDITTO I., ODONOHUE M., MONTANIER C. (2021-11-25). The Jo-In protein welding system is a relevant tool to create CBM-containing plant cell wall degrading enzymes. New Biotechnology, 65, 31-41, 10.1016/j.nbt.2021.07.004, https://hal.archives-ouvertes.fr/hal-03340154
• PELUS A., BORDES G., BARBE S., BOUCHIBA Y., BURNARD C., CORTES J., ENJALBERT B., ESQUE J., ESTANA A., FAURE R., HENRAS A., HEUX S., LE MEN C., MILLARD P., NOUAILLE S., PEROCHON J., TOANEN M., TRUAN G., VERDIER A., WAGNER C., ROMEO Y., MONTANIER C. (2021-10-01). A tripartite carbohydrate-binding module to functionalize cellulose nanocrystal. Biomaterials Science, 9 (22), 7444-7455, 10.1039/d1bm01156a, https://hal.archives-ouvertes.fr/hal-03372120
• WU H., IOANNOU E., HENRISSAT B., MONTANIER C., BOZONNET S., O’DONOHUE M., DUMON C. (2021-01-15). Multimodularity of a GH10 Xylanase Found in the Termite Gut Metagenome. Applied and Environmental Microbiology, 87 (3), 10.1128/AEM.01714-20, https://hal.archives-ouvertes.fr/hal-03146857
• ZHAOYU H., BENKOULOUCHE M., BAREL L.-A., LE HEIGET G., BEN IMEDDOURENE A., LE GUEN Y., MONTIES N., GUERREIRO C., REMAUD SIMEON M., MOULIS C., ANDRE I., MULARD L. A. (2021-02-05). A convergent chemoenzymatic strategy to deliver a diversity of Shigella flexneri serotype-specific O-antigen segments from a unique lightly protected tetrasaccharide core. Journal of Organic Chemistry, 86 (3), 2058-2075, 10.1021/acs.joc.0c00777, https://hal.archives-ouvertes.fr/hal-03020947
• GHERBOVET O., FERREIRA F., CLEMENT A., RAGON M., DURAND J., BOZONNET S., O’DONOHUE M., FAURE R. (2021). Regioselective chemo-enzymatic syntheses of ferulate conjugates as chromogenic substrates for feruloyl esterases. Beilstein Journal of Organic Chemistry, 17, 325-333, 10.3762/bxiv.2020.107.v1, https://hal.archives-ouvertes.fr/hal-02988548
• BENKOULOUCHE M., BEN IMEDDOURENE A., BAREL L.-A., LE HEIGET G., PIZZUT S., KULYK H., BELLVERT F., BOZONNET S., MULARD L., REMAUD-SIMEON M., MOULIS C., ANDRE I. (2021). Redirecting substrate regioselectivity using engineered ΔN123-GBD-CD2 branching sucrases for the production of pentasaccharide repeating units of S. flexneri 3a, 4a and 4b haptens. Scientific Reports, 11, 10.1038/s41598-021-81719-1, https://hal.archives-ouvertes.fr/hal-03139892
• MOLINA M., CIOCI G., MOULIS C., SEVERAC E., REMAUD-SIMEON M. (2021-08). Bacterial α-Glucan and Branching Sucrases from GH70 Family: Discovery, Structure–Function Relationship Studies and Engineering. Microorganisms, 9 (8), 1607, 10.3390/microorganisms9081607, https://hal.archives-ouvertes.fr/hal-03340133
• JAVOUREZ U., O’DONOHUE M., HAMELIN L. (2021-12). Waste-to-nutrition: a review of current and emerging conversion pathways. Biotechnology Advances, 53, 26 p., 10.1016/j.biotechadv.2021.107857, https://hal.archives-ouvertes.fr/hal-03426554
• TOURNOIS M., MATHE S., ANDRE I., FERNANDEZ M. A. (2021-07). Surface charge distribution: a key parameter for understanding protein behavior in chromatographic processes. Journal of Chromatography A, 1648, 10.1016/j.chroma.2021.462151, https://hal.archives-ouvertes.fr/hal-03269416
• COX N., CHARLIER C., VIJAYARAJ R., DE LA MARE M., BARBE S., ANDRE I., LIPPENS G., MONTANIER C. (2021-12-14). The covalent complex of Jo-In results from a long-lived, non-covalent intermediate state with near-native structure. Biochemical and Biophysical Research Communications, 589, 223-228, 10.1016/j.bbrc.2021.12.028, https://hal.archives-ouvertes.fr/hal-03554277
• BARDOU P., LAGUERRE S., MAMAN HADDAD S., LEGOUEIX S., LAVILLE E., DUMON C., POTOCKI-VERONESE G., KLOPP C. (2021-09-27). MINTIA: a metagenomic INserT integrated assembly and annotation tool. PeerJ, 9, 13 p., 10.7717/peerj.11885, https://hal.archives-ouvertes.fr/hal-03407218

• HOARAU J., PETIT T., GRONDIN I., MARTY A., CARO Y. (2020-10). Phosphate as a limiting factor for the improvement of single cell oil production from Yarrowia lipolytica MUCL 30108 grown on pre-treated distillery spent wash. Journal of Water Process Engineering, 37, 101392, 10.1016/j.jwpe.2020.101392, https://hal.archives-ouvertes.fr/hal-02973597
• HERVIOU P., LE BRAS M., DUMAS L., HIEBLOT C., GILHODES J., CIOCI G., HUGNOT J.-P., AMEADAN A., DASSI E., CAMMAS A., MILLEVOI S. (2020-05-27). hnRNP H/F drive RNA G-quadruplex-mediated translation linked to genomic instability and therapy resistance in glioblastoma. Nature Communications, 11 (1), 1-17, 10.1038/s41467-020-16168-x, https://hal.archives-ouvertes.fr/hal-02879110
• LI A., LAVILLE E., TARQUIS L., LOMBARD V., ROPARTZ D., TERRAPON N., HENRISSAT B., GUIEYSSE D., ESQUE J., DURAND J., MORGAVI D., POTOCKI-VERONESE G. (2020). Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function. Microbial Genomics, 6 (10), 1-14, 10.1099/mgen.0.000404, https://hal.archives-ouvertes.fr/hal-02949655
• NUNEZ-LOPEZ G., MOREL S., HERNANDEZ L., MUSACCHIO A., AMAYA-DELGADO L., GSCHAEDLER A., REMAUD-SIMEON M., ARRIZON J. (2020-07-09). One-pot bi-enzymatic cascade synthesis of puerarin polyfructosides. Carbohydrate Polymers, 247, 10.1016/j.carbpol.2020.116710, https://hal.archives-ouvertes.fr/hal-04826170
• LAFOND M., TAUZIN A., BRUEL L., LAVILLE E., LOMBARD V., ESQUE J., ANDRE I., VIDAL N., POMPEO F., QUINSON N., PERRIER J., FONS M., POTOCKI-VERONESE G., GIARDINA T. (2020-11-12). α-Galactosidase and Sucrose-Kinase Relationships in a Bi-functional AgaSK Enzyme Produced by the Human Gut Symbiont Ruminococcus gnavus E1. Frontiers in Microbiology, 11, 579521, 10.3389/fmicb.2020.579521, https://hal.archives-ouvertes.fr/hal-03003380
• LAGRESLE-PEYROU C., OLICHON A., SADEK H., ROCHE P., TARDY C., DA SILVA C., GARRIGUE A., FISCHER A., MOSHOUS D., COLLETTE Y., PICARD C., CASANOVA J. L., ANDRE I., CAVAZZANA M. (2020). A gain-of-function RAC2 mutation is associated with bone-marrow hypoplasia and an autosomal dominant form of severe combined immunodeficiency. Haematologica, , 10.3324/haematol.2019.230250, https://hal.archives-ouvertes.fr/hal-02545998
• VOSS M., XIANG C., ESQUE J., NOBILI A., MENKE M., ANDRE I., HOHNE M., BORNSCHEUER U. (2020-01-22). Creation of ( R )-Amine Transaminase Activity within an α-Amino Acid Transaminase Scaffold. ACS Chemical Biology, 15 (2), 416-424, 10.1021/acschembio.9b00888, https://hal.archives-ouvertes.fr/hal-02529029
• ENJALBERT T., DE LA MARE M., ROBLIN P., BADRUNA L., VERNET T., DUMON C., MONTANIER C. (2020-06). Characterisation of the Effect of the Spatial Organisation of Hemicellulases on the Hydrolysis of Plant Biomass Polymer. International Journal of Molecular Sciences, 21 (12), 4360, 10.3390/ijms21124360, https://hal.archives-ouvertes.fr/hal-02889096
• BOURLIEU C., ASTRUC T., BARBE S., BERRIN J.-G., BONNIN E., BOUTROU R., HUGOUVIEUX V., LE FEUNTEUN S., PAES G. (2020-04-08). Enzymes to unravel bioproducts architecture. Biotechnology Advances, 41, 107546, 10.1016/j.biotechadv.2020.107546, https://hal.archives-ouvertes.fr/hal-02553024
• STEVENS J. C., RODGERS D., DUMON C., SHI J. (2020-07-24). Characterization and Enzyme Engineering of a Hyperthermophilic Laccase Toward Improving Its Activity in Ionic Liquid. Frontiers in Energy Research, 8, 10.3389/fenrg.2020.00158, https://hal.archives-ouvertes.fr/hal-02926307
• VUCINIC J., SIMONCINI D., RUFFINI M., BARBE S., SCHIEX T. (2020). Positive multistate protein design. Bioinformatics, , 10.1093/bioinformatics/btz497, https://hal.archives-ouvertes.fr/hal-02625007
• LI J., ZHONG H., RAMAYO-CALDAS Y., TERRAPON N., LOMBARD V., POTOCKI-VERONESE G., ESTELLE J., POPOVA M., YANG Z., ZHANG H., LI F., TANG S., YANG F., CHEN W., CHEN B., LI J., GUO J., MARTIN C., MAGUIN E., XU X., YANG H., WANG J., MADSEN L., KRISTIANSEN K., HENRISSAT B., EHRLICH S., MORGAVI D. (2020). A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. GigaScience, 9 (6), 1-15, 10.1093/gigascience/giaa057, https://hal.archives-ouvertes.fr/hal-02860679
• SARRADE-LOUCHEUR A., RO D.-K., FAURE R., REMAUD-SIMEON M., TRUAN G. (2020-01-24). Synthetic Derivatives of (+)- epi -α-Bisabolol Are Formed by Mammalian Cytochromes P450 Expressed in a Yeast Reconstituted Pathway. ACS Synthetic Biology, 9 (2), 368-380, 10.1021/acssynbio.9b00399, https://hal.archives-ouvertes.fr/hal-02518797
• BORSENBERGER V., CROUX C., DABOUSSI F., NEUVEGLISE C., BORDES F. (2020). Developing Methods to Circumvent the Conundrum of Chromosomal Rearrangements Occurring in Multiplex Gene Edition. ACS Synthetic Biology, 9 (9), 2562-2575, 10.1021/acssynbio.0c00325, https://hal.archives-ouvertes.fr/hal-02960618
• GUO Z.-P., BORSENBERGER V., CROUX C., DUQUESNE S., TRUAN G., MARTY A., BORDES F. (2020-12). An artificial chromosome ylAC enables efficient assembly of multiple genes in Yarrowia lipolytica for biomanufacturing. Communications Biology, 3 (1), 10.1038/s42003-020-0936-y, https://hal.archives-ouvertes.fr/hal-02624142
• TAUZIN A., PEREIRA M., VAN VLIET L., COLIN P.-Y., LAVILLE E., ESQUE J., LAGUERRE S., HENRISSAT B., TERRAPON N., LOMBARD V., LECLERC M., DORE J., HOLLFELDER F., POTOCKI-VERONESE G. (2020). Investigating host-microbiome interactions by droplet based microfluidics. Microbiome, 8 (1), 10.1186/s40168-020-00911-z, https://hal.archives-ouvertes.fr/hal-02961383
• FOURNIE M., TRUAN G. (2020-12). Multiplicity of carotene patterns derives from competition between phytoene desaturase diversification and biological environments. Scientific Reports, 10 (1), 10.1038/s41598-020-77876-4, https://hal.archives-ouvertes.fr/hal-03040485
• WANG Z., TAUZIN A. S., LAVILLE E., TEDESCO P., LETISSE F., TERRAPON N., LEPERCQ P., MERCADE M., POTOCKI-VERONESE G. (2020). Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria. mSphere, 5 (1), 26 p., 10.1128/mSphere.00771-19, https://hal.archives-ouvertes.fr/hal-02478442
• MOLINA M., MOULIS C., MONTIES N., GUIEYSSE D., MOREL S., CIOCI G., REMAUD-SIMEON M. (2020-07-10). A specific oligosaccharide-binding site in the alternansucrase catalytic domain mediates alternan elongation. Journal of Biological Chemistry, 295 (28), 9474-9489, 10.1074/jbc.RA120.013028, https://hal.archives-ouvertes.fr/hal-02918812
• LAJUS S., DUSSEAUX S., VERBEKE J., RIGOUIN C., GUO Z., FATAROVA M., BELLVERT F., BORSENBERGER V., BRESSY M., NICAUD J.-M., MARTY A., BORDES F. (2020-10-22). Engineering the Yeast Yarrowia lipolytica for Production of Polylactic Acid Homopolymer. Frontiers in Bioengineering and Biotechnology, 8, 10.3389/fbioe.2020.00954, https://hal.archives-ouvertes.fr/hal-03012010
• CLAVERIE M., CIOCI G., VUILLEMIN M., BONDY P., REMAUD-SIMEON M., MOULIS C. (2020-04). Processivity of dextransucrases synthesizing very-high-molar-mass dextran is mediated by sugar-binding pockets in domain V. Journal of Biological Chemistry, 295 (17), 5602-5613, 10.1074/jbc.RA119.011995, https://hal.archives-ouvertes.fr/hal-03128976
• TOURNIER V., TOPHAM C., GILLES A., DAVID B., FOLGOAS C., MOYA-LECLAIR E., KAMIONKA E., DESROUSSEAUX M.-L., TEXIER H., GAVALDA S., COT M., GUEMARD E., DALIBEY M., NOMME J., CIOCI G., BARBE S., CHATEAU M., ANDRE I., DUQUESNE S., MARTY A. (2020-04). An engineered PET depolymerase to break down and recycle plastic bottles. Nature, 580 (7802), 216-219, 10.1038/s41586-020-2149-4, https://hal.archives-ouvertes.fr/hal-02545880
• TOURNOIS M., MATHE S., ANDRE I., ESQUE J., FERNANDEZ M. (2020-03). Understanding adsorption behavior of α-chymotrypsin onto cation exchanger using all-atom molecular dynamics simulations. Journal of Chromatography A, 1614, 10.1016/j.chroma.2019.460720, https://hal.archives-ouvertes.fr/hal-02528931

• DESMONS S., FAURE R., BONTEMPS S. (2019). Formaldehyde as a Promising C1 Source: The Instrumental Role of Biocatalysis for Stereocontrolled Reactions. ACS Catalysis, 9 (10), 9575-9588, 10.1021/acscatal.9b03128, https://hal.archives-ouvertes.fr/hal-02330241
• LAVILLE E., PERRIER J., BEJAR N., MARESCA M., ESQUE J., TAUZIN A., BOUHAJJA E., LECLERC M., DRULA E., HENRISSAT B., BERDAH S., DI PASQUALE E., ROBE P., POTOCKI-VERONESE G. (2019). Investigating Host Microbiota Relationships Through Functional Metagenomics. Frontiers in Microbiology, 10, 12 p., 10.3389/fmicb.2019.01286, https://hal.archives-ouvertes.fr/hal-02315852
• CHARPENTIER A., MIGNON D., BARBE S., CORTES J., SCHIEX T., SIMONSON T., ALLOUCHE D. (2019). Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems. Journal of Chemical Information and Modeling, 59 (1), 127-136, 10.1021/acs.jcim.8b00510, https://hal.archives-ouvertes.fr/hal-01943616
• SIMONCINI D., ZHANG K. Y. J., SCHIEX T., BARBE S. (2019). A structural homology approach for computational protein design with flexible backbone. Bioinformatics, 35 (14), 10.1093/bioinformatics/bty975, https://hal.archives-ouvertes.fr/hal-02114756
• DAUDE D., VERGES A., CAMBON E., EMOND S., TRANIER S., ANDRE I., REMAUD SIMEON M. (2019). Neutral Genetic Drift-Based Engineering of a Sucrose-Utilizing Enzyme toward Glycodiversification. ACS Catalysis, 9 (2), 1241-1252, 10.1021/acscatal.8b03609, https://hal.archives-ouvertes.fr/hal-02177344
• KREBS F., ESQUE J., STOTE R. (2019-10). A computational study of the molecular basis of antibiotic resistance in a DXR mutant. Journal of Computer-Aided Molecular Design, 33 (10), 927-940, 10.1007/s10822-019-00229-5, https://hal.archives-ouvertes.fr/hal-02388666
• BENKOULOUCHE M., FAURE R., REMAUD SIMEON M., MOULIS C., ANDRE I. (2019-04-06). Harnessing glycoenzyme engineering for synthesis of bioactive oligosaccharides. Interface Focus, 9 (2), 20180069, 10.1098/rsfs.2018.0069, https://hal.archives-ouvertes.fr/hal-02146106
• TAUZIN A., BRUEL L., LAVILLE E., NICOLETTI C., NAVARRO D., HENRISSAT B., PERRIER J., POTOCKI-VERONESE G., GIARDINA T., LAFOND M. (2019). Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome. Microbial Genomics, , np, 10.1099/mgen.0.000253, https://hal.archives-ouvertes.fr/hal-02095894
• DEJEAN G., TAUZIN A., BENNETT S., CREAGH A. L., BRUMER H. (2019-10-15). Adaptation of Syntenic Xyloglucan Utilization Loci of Human Gut Bacteroidetes to Polysaccharide Side Chain Diversity. Applied and Environmental Microbiology, 85 (20), 10.1128/AEM.01491-19, https://hal.archives-ouvertes.fr/hal-02966599
• DESMONS S., ZHANG D., MEJIA FAJARDO A., BONTEMPS S. (2019). Versatile CO2 Transformations into Complex Products: A One-pot Two-step Strategy. Journal of visualized experiments : JoVE, (153), 6 p., 10.3791/60348, https://hal.archives-ouvertes.fr/hal-02469938
• RAHUEL-CLERMONT S., BCHINI R., BARBE S., BOUTSERIN S., ANDRE I., TALFOURNIER F. (2019-01-15). Enzyme Active Site Loop Revealed as a Gatekeeper for Cofactor Flip by Targeted Molecular Dynamics Simulations and FRET-Based Kinetics. ACS Catalysis, 9 (2), 1337-1346, 10.1021/acscatal.8b03951, https://hal.archives-ouvertes.fr/hal-02022828
• NUNEZ LOPEZ G., HERRERA-GONZALEZ A., HERNANDEZ L., AMAYA-DELGADO L., SANDOVAL G., GSCHAEDLER A., ARRIZON J., REMAUD SIMEON M., MOREL S. (2019). Fructosylation of phenolic compounds by levansucrase from Gluconacetobacter diazotrophicus. Enzyme and Microbial Technology, 122, 19-25, 10.1016/j.enzmictec.2018.12.004, https://hal.archives-ouvertes.fr/hal-02479984
• GRIMAUD F., PIZZUT-SERIN S., TARQUIS L., LADEVEZE S., MOREL S., PUTAUX J.-L., POTOCKI-VERONESE G. (2019). In Vitro Synthesis and Crystallization of β-1,4-Mannan. Biomacromolecules, 20 (2), 846-853, 10.1021/acs.biomac.8b01457, https://hal.archives-ouvertes.fr/hal-02177345
• ARNAL G., STOGIOS P., ASOHAN J., ATTIA M., SKARINA T., HOLM VIBORG A., HENRISSAT B., SAVCHENKO A., BRUMER H. (2019-09-06). Substrate specificity, regiospecificity, and processivity in glycoside hydrolase family 74. Journal of Biological Chemistry, 294 (36), 13233 – 13247, 10.1074/jbc.RA119.009861, https://hal.archives-ouvertes.fr/hal-02611195
• THEERACHAT M., GUIEYSSE D., MOREL S., REMAUD-SIMEON M., CHULALAKSANANUKUL W. (2019). Laccases from Marine Organisms and Their Applications in the Biodegradation of Toxic and Environmental Pollutants: a Review. Applied Biochemistry and Biotechnology, 187 (2), 583-611, 10.1007/s12010-018-2829-9, https://hal.archives-ouvertes.fr/hal-02185869
• ALONSO-GIL S., COINES J., ANDRE I., ROVIRA C. (2019). Conformational Itinerary of Sucrose During Hydrolysis by Retaining Amylosucrase. Frontiers in Chemistry, 7, 1-10, 10.3389/fchem.2019.00269, https://hal.archives-ouvertes.fr/hal-02170449
• NOGUCHI H., ADDY C., SIMONCINI D., WOUTERS S., MYLEMANS B., VAN MEERVELT L., SCHIEX T., ZHANG K. Y. J., TAME J. R. H., VOET A. R. D. (2019). Computational design of symmetrical eight-bladed β-propeller proteins. International Union of Crystallography journal, 6 (1), 46-55, 10.1107/S205225251801480X, https://hal.archives-ouvertes.fr/hal-02154353
• MONTANIER C., FANUEL M., ROGNIAUX H., ROPARTZ D., DI GUILMI A.-M., BOUCHOUX A. (2019). Changing surface grafting density has an effect on the activity of immobilized xylanase towards natural polysaccharides. Scientific Reports, 9 (1), 5763, 10.1038/s41598-019-42206-w, https://hal.archives-ouvertes.fr/hal-02160983
• ROBIN J., GUEROULT M., CHEIKHROUHOU R., GUICHERD M., BORSENBERGER V., MARTY A., BORDES F. (2019). Identification of a crucial amino acid implicated in the hydroxylation/desaturation ratio of CpFAH12 bifunctional hydroxylase. Biotechnology and Bioengineering, , 12 p., 10.1002/bit.27102, https://hal.archives-ouvertes.fr/hal-02271476
• RIGOUIN C., LAJUS S., OCANDO C., BORSENBERGER V., NICAUD J.-M., MARTY A., AVEROUS L., BORDES F. (2019). Production and characterization of two medium-chain-length polydroxyalkanoates by engineered strains of Yarrowia lipolytica. Microbial Cell Factories, 18 (1), 9 p., 10.1186/s12934-019-1140-y, https://hal.archives-ouvertes.fr/hal-02317181
• MOLINA M., MOULIS C., MONTIES N., PIZZUT-SERIN S., GUIEYSSE D., MOREL S., CIOCI G., REMAUD-SIMEON M. (2019-01-29). Deciphering an Undecided Enzyme: Investigations of the Structural Determinants Involved in the Linkage Specificity of Alternansucrase. ACS Catalysis, 9 (3), 2222 – 2237, 10.1021/acscatal.8b04510, https://hal.archives-ouvertes.fr/hal-04819319
• CLAVERIE M., CIOCI G., GUIONNET M., SCHORGHUBER J., LICHTENECKER R., MOULIS C., REMAUD SIMEON M., LIPPENS G. (2019-06-25). Futile Encounter Engineering of the DSR-M Dextransucrase Modifies the Resulting Polymer Length. Biochemistry, 58 (25), 2853-2859, 10.1021/acs.biochem.9b00373, https://hal.archives-ouvertes.fr/hal-02176417
• LOMTHONG T., GUICHERD M., CIOCI G., DUQUESNE S., MARTY A., LUMYONG S., KITPREECHAVANICH V. (2019). Poly(L-lactide)-Degrading Enzyme from Laceyella sacchari LP175: Cloning, Sequencing, Expression, Characterization and Its Hydrolysis of Poly(L-lactide) Polymer. Chiang Mai Journal of Science, 46 (3), 417-430, https://hal.archives-ouvertes.fr/hal-02317163
• AHMADI A., SEVERAC E., MONTIES N., CLAVERIE M., REMAUD-SIMEON M., MOULIS C., TIRUTA-BARNA L. (2019). Eco-design approach for an innovative production process of low molar mass dextran. Green Chemistry, 21 (16), 4512-4531, 10.1039/C9GC01583C, https://hal.archives-ouvertes.fr/hal-04335208
• CERULLO G., VARRIALE S., BOZONNET S., ANTONOPOULOU I., CHRISTAKOPOULOS P., ROVA U., GHERBOVET O., FAURE R., PIECHOT A., JUTTEN P., BRAS J. L., FONTES C. M., FARACO V. (2019-07). Directed evolution of the type C feruloyl esterase from Fusarium oxysporum FoFaeC and molecular docking analysis of its improved variants. New Biotechnology, 51, 14-20, 10.1016/j.nbt.2019.01.008, https://hal.archives-ouvertes.fr/hal-02146024

• Abbott W, Alber O, Bayer E, Berrin JG, Boraston A, Brumer H, Brzezinski R, Clarke A, Cobucci-Ponzano B, Cockburn D, Coutinho P, Czjzek M, Dassa B, Davies GJ, Eijsink V, Eklof J, Felice A, Ficko-Blean E, Pincher G, Fontaine T, Fujimoto Z, Fujita K, Fushinobu S, Gilbert H, Gloster T, Goddard-Borger E, Greig I, Hehemann J-H, Hemsworth G, Henrissat B, Hidaka M, Hurtado-Guerrero R, Igarashi K, Ishida T, Janecek S, Jongkees S, Juge N, Kaneko S, Katayama T, Kitaoka M, Konno N, Kracher D, Kulminskaya A, van Bueren A L, Larsen S, Lee J, Linder M, LoLeggio L, Ludwig R, Luis A, Maksimainen M, Mark B, McLean R, Michel G, Montanier C, Moracci M, Mori H, Nakai H, Nerinckx W, Ohnuma T, Pickersgill R, Piens K, Pons T, Rebuffet E, Reilly P, Remaud Simeon M, Rempel B, Robinson K, Rose D, Rouvinen J, Saburi W, Sakamoto Y, Sandgren M, Shaikh F, Shoham Y, St John F, Stahlberg J, Suits M, Sulzenbacher G, Sumida T, Suzuki R, Svensson B, Taira T, Taylor E, Tonozuka T, Urbanowicz B, Vaaje-Kolstad G, Van den Ende W, Varrot A, Versluys M, Vincent F, Vocadlo D, Wakarchuk W, Wennekes T, Williams R, Williams S, Wilson D, Withers S, Yaoi K, Yip V, Zhang R. 2018. Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes. Glycobiology, 28 (1), 3-8. (IF = 3.624)
• Ameri R, Laville E, Potocki-Véronèse G, Trabelsi S, Mezghani M, Elgharbi F,  Bejar S. 2018. Two new gene clusters involved in the degradation of plant cell wall from the fecal microbiota of Tunisian dromedary. PLoS one, 13(3): e0194621. (IF = 3.352)
• Ben Imeddourene A, Esque J, André I. 2018. Combining multi-scale modelling methods to decipher molecular motions of a Branching Sucrase from Glycoside-Hydrolase Family 70. PLoS One.13(8):e0201323. (IF = 3.352)
• Borsenberger V, Onésime D, Lestrade D, Rigouin C, Neuvéglise C, Daboussi F, Bordes F. 2018. Multiple Parameters Drive the Efficiency of CRISPR/Cas9 Induced Gene Modifications in Yarrowia lipolytica. J. Mol. Biol., 2018. pii: S0022-2836(18)30293-6. (IF = 4.632)
• Dagkesamanskaya A, Langer K, Tauzin A, Rouzeau C, Lestrade D, Potocki-Veronese G, Boitard L, Bibette J, Baudry J, Pompon D, Anton-Leberre V. 2018. Use of photoswitchable Fluorescent Proteins for droplet-based microfluidic screening. J. Microbiol. Methods, 147, 59-65. (IF = 1.79)
• de Vries H, Axelos M, Sarni-Manchado P, O’Donohue M. 2018. Meeting new challenges in food science technology: the development of complex systems approach for food and biobased research. Innovative Food Science and Emerging Technologies, 46:1-6. (IF = 3.706)
• Esque J, Sansom MSP, Baaden M, Oguey C. 2018. Analyzing protein topology based on Laguerre tessellation of a pore-traversing water network. Sci. Report, 8(1), 13540. (IF = 4.609)
• Faucard P, Grimaud F, Lourdin D, Maigret JE, Moulis C, Remaud-Siméon M, Putaux JL, Potocki-Véronèse G, Rolland-Sabaté A. 2018. Macromolecular Structure and Film Properties of Enzymatically-Engineered High Molar Mass Dextrans. Carbohydr. Polymers, 181:337-44 (IF = 5.326)
• Forsberg Z, Bissaro B, Gullesen J, Dalhus B, Vaaje-Kolstad G, Eijsink V. 2018. Structural determinants of bacterial lytic polysaccharide monooxygenase functionality. J. Biol. Chem., 293(4):1397-1412.  (IF = 4.253)
• Grimaud F, Faucard P, Tarquis L, Pizzut-Serin S, Roblin P, Morel S, Le Gall S, Falourd X, Rolland-Sabaté A, Lourdin D, Moulis C, Remaud-Siméon M, Potocki-Veronese G. 2018.  Enzymatic synthesis of polysaccharide-based copolymers. Green Chem., 20: 4012-22 (IF = 8.717)
• Grimaud F, Pizzut-Serin S, Tarquis L, Ladevèze S, Morel S, Putaux JL, Potocki-Véronèse G. 2018.  In Vitro Synthesis and Crystallization of β-1,4-Mannan. Biomacromolecules, 20:846-53. (IF = 5.941)
• Guo Z, Robin J, Duquesne S, O’Donohue MJ, Marty A, Bordes F. 2018. Developing cellulolytic Yarrowia lipolytica as a platform for consolidated bioprocessing of cellulose to valuable products. Biotechnol. Biofuels., 11:141(IF = 6.661)
• Guo Z, Khoomrung S, Nielsen J, Olsson L. 2018. Changes in lipid metabolism convey acid tolerance in Saccharomyces cerevisiae. Biotechnol. Biofuels., 11:297. (IF = 6.661)
• Irague R, Topham C, Martineau N, Baylac A, Cordier H, Dressaire C, Auriol C, Maestracci M, Huet R, Walther T, François J-M, André I, Remaud-Siméon M. 2018. Conversion of an aspartate kinase into a malate kinase using a generic HTS assay for kinase screening. PLoS One, 13(2):e0193036. (IF = 3.352)
• Jacquet M, Cioci G, Fouet G, Bally I, Thielens N, Gaboriaud C, Rossi V. 2018. C1q and Mannose-Binding Lectin Interact with CR1 in the Same Region on CCP24-25 Modules. Frontiers in Immunology, 9:453. (IF = 6.059)
• Lazuka A, Auer L, O’Donohue M, Hernandez Raquet G. 2018. Anaerobic lignocellulolytic microbial consortium derived from termite gut: enrichment, lignocellulose degradation and community dynamics. Biotechnol. Biofuels. 11:284. (IF = 6.661)
• Lomthong T, Chotineeranat S, Cioci G, Laville E, Duquesne S, Choowongkomon K, Marty A, Kitpreechavanich V. 2018. Molecular cloning and sequencing of raw starch degrading gene from Laceyella sacchari LP175 and its functional expression in Escherichia coli. Chiang Mai J. of Science, 45 (4): 1634-1648. (JCR = 0.535)
• Malbert Y, Moulis C, Brison Y, Morel S, André I, Remaud-Siméon M. 2018. Engineering a branching sucrase for flavonoid glucoside diversification. Sci. report, 8:15153. (IF = 4.609)
• Müller G, Chylenski P,  Bissaro B, Eijsink VGH, Horn SJ. 2018. The impact of hydrogen peroxide supply on LPMO activity and overall saccharification efficiency of a commercial cellulase cocktail. Biotechnol. Biofuels, 11:209. (IF = 6.661)
• Rigouin C, Croux C, Borsenberger V, Ben Khaled M, Chardot T, Marty A, Bordes F. 2018. Increasing medium chain fatty acids production in Yarrowia lipolytica by metabolic engineering. Microbial Cell Factories. 17(1):142. (IF = 4.295)
• Simoncini D, Zhang KYJ, Schiex T, Barbe S. 2018. A Structural Homology Approach for Computational Protein Design with Flexible Backbone. Bioinformatics, bty975. (IF = 8.561)
• Ufarté L, Potocki-Veronese G, Cecchini D, Rizzo A, Morgavi D, Cathala B, Moreau C, Cleret M, Robe P, Klopp C, Laville E. 2018. Highly promiscuous oxidases discovered by functional exploration of the bovine rumen microbiome. Frontiers in Microbiology, 9:861. (IF = 4.557)
• Varriale S, Cerullo G, Antonopoulou I, Christakopoulos P, Rova U, Tron T, Fauré R, Jütten P, Piechot A, Brás JLA, Fontes CMG., Faraco V. 2018. Evolution of the feruloyl esterase MtFae1a from Myceliophthora thermophila towards improved catalysts for antioxidants synthesis. Appl. Microbiol. Biotechnol., 102(12):5185-5196 (IF = 3.602)
• Viricel C, De Givry S, Schiex T, Barbe S. 2018. Cost Function Network-based Design of Protein-Protein Interactions: predicting changes in protein binding affinity. Bioinformatics, 34:2581-2589. (IF = 8.561)
• Vuillemin M, Grimaud F, Claverie M, Rolland-Sabaté A, Garnier C, Lucas P, Monsan P, Dols-Lafargue M, Remaud-Siméon M, Moulis C. 2018. A dextran with unique rheological properties produced by the dextransucrase from Oenococcus kitaharae DSM 17330. Carbohydr. Polym., 179:10-18. (IF = 5.326)

Proceedings

• Simoncini D, Barbe S, Schiex T, Verel S. 2018. Fitness Landscape Analysis around the Optimum in Computational Protein Design. In GECCO ’18: Genetic and Evolutionary Computation Conference, July 15 – 19, 2018, Kyoto, Japan. Full Research Paper. CORE A. ACM, New York, NY, USA

• Auer L, Mariadassou M, O’Donohue M, Klopp C, Hernandez-Raquet G. 2017. Analysis of large 16S rRNA Illumina datasets: impact of singleton read filtering on microbial community description. Molecular Ecology Resources, 17(6):e122-e132. (IF = 6.073)
• Auer L, Lazuka A, Sillam-Dussès D, Miambi E, O’Donohue M, Hernandez-Raquet G. 2017. Uncovering the potential of termite gut microbiome for lignocellulose bioconversion in anaerobic batch bioreactors. Frontiers in Microbiology, 8:2623. (IF = 4.557)
• Camarasa C, Chiron H, Daboussi F, Della Valle G, Dumas C, Farines V, Floury J, Gagnaire V, Gorret N, Léonil J, Mouret J-R, O’Donohue M J, Sablayroles J-M, Salmon J-M, Saulnier L, Truan G. 2017. INRA’s research in industrial biotechnology: For food, chemicals, materials and fuels. Innovative Food Science & Emerging Technologies, 46:140-152. (IF = 3.706)
• Claverie M, Cioci G, Vuillemin M, Monties N, Roblin P, Lippens G, Remaud-Simeon M, Moulis C. 2017. Investigations on the determinants responsible for low molar mass dextran formation by DSR-M dextransucrase. ACS Catal., 7 : 7106–7119. (IF = 11.783)
• Decout A, Silva-Gomes S, Drocourt D, Barbe S, André I, Lioux T, Pérouzel E, Vercellone A, Gilleron M, Prandi J, Tiraby G, Nigou J. 2017. Rational design of new adjuvant ligands of the C-type lectin Mincle. Proc. Natl. Acad. Sci. 114(10) : 2675-80. (IF = 10.359)
• Gauquelin C, Baffert C, Richaud P, Kamionka E, Etienne E, Guieysse D, Girbal L, Fourmond V, André I, Guigliarelli B, Léger C, Soucaille P, Meynial-salles I. 2017. Roles of the F-domain in [FeFe] hydrogenase. BBA – Bioenergetics, 1859:69-77. (IF = 4.785)
• Gerard D, Gueroult M, Casas-Godoy L, Condoret JS., André I, Marty A, Duquesne S. 2017. Efficient resolution of profen ethyl ester racemates by engineered Yarrowia lipolytica Lip2p lipase. Tetahedr. Asymmetry, 28:433-441 (IF = 1.858 )
• Gerard D, Camy S, Marty A, Condoret JS. 2017. Resolution of 2-bromo-arylacetic acid ester by Yarrowia lipolytica lipase in water/supercritical CO₂ two phase system. J. supercrit. fluid, 121:96-104 (IF = 3.001)
• Guo Z, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O’Donohue MJ. 2017. Conferring cellulose-degrading ability to Yarrowia lipolytica to facilitate a consolidated bioprocessing approach. Biotechnol Biofuels, 10:132. (IF = 6.661)
• Guo Z, Duquesne S, Bozonnet S, Nicaud JM, Marty A, O’Donohue MJ. 2017. Expressing accessory proteins in cellulolytic Yarrowia lipolytica to improve the conversion yield of recalcitrant cellulose. Biotechnol Biofuels, 10:298.(IF = 6.661)
• Lazuka A, Roland C, Barakat A, Guillon F, O’Donohue M, Hernandez Raquet G. 2017. Ecofriendly lignocellulose pretreatment to enhance the carboxylate production of a rumen-derived microbial consortium. Bioresource Technol. 236 : 225-233. (IF = 5.978)
• Lazuka A, Auer L, O’Donohue MJ, Hernandez-Raquet G. 2017. Efficient carboxylate production from wheat straw by a microbial consortium derived from termite Nasutitermes ephratae gut microbiome. Frontiers in Microbiology, https://doi.org/10.3389/fmicb.2017.02623 (IF = 4.557)
• Lomthong T, Hanphakphoom S, Kongsaeree P, Srisuk N, Guicherd M, Cioci G, Duquesne S, Marty A, Kitpreechavanich V. 2017 Enhancement of poly(L-lactide)-degrading enzyme production by Laceyella sacchari LP175 using agricultural crops as substrates and its degradation of poly(L-lactide) polymer. Polymer Degradation and Stability, 143: 64-73. (IF = 3.797)
• Montanier C, Chabot N, Emond S, Guieysse D, Remaud-Siméon M, Peruch F, André I. 2017. Engineering of Candida antarctica lipase B for poly(ε-caprolactone) synthesis. European Polymer Journal, 95, 809-819. (IF 3.= 3.795)
• Nouaille S, Mondeil S, Finoux AL, Moulis C, Girbal L, Cocaign-Bousquet M, 2017. The stability of an mRNA is influenced by its concentration: a potential physical mechanism to regulate gene expression. Nucleic Acids Res., 45:11711-24. (IF = 10.235)
• Rigouin C, Gueroult M, Croux C, Dubois G, Borsenberger V, Barbe S, Marty A, Daboussi F, André I, Bordes F. 2017. Production of Medium Chain Fatty Acids by Yarrowia lipolytica: Combining Molecular Design and TALEN to Engineer the Fatty Acid Synthase. ACSSynth Biol., 6(10):1870-1879. (IF = 5.253)
• Scillipoti J, Nioi C, Marty A, Camy S, Condoret JS. 2017. Prediction of conversion at equilibrium for lipase esterification in two-phase systems. Biochem. Eng. J. 117, Part A: 162–171. (IF = 3.106)
• Ufarté L, Laville E, Duquesne S, Morgavi D, Robe P, Klopp C, Rizzo A, Pizzut-Serin S, Potocki-Veronese G. 2017. Discovery of carbamate degrading enzymes by functional metagenomics. PLoS One, 12(12): e0189201. (IF  = 3.352)
• Vergés A, Cambon E, Barbe S, Moulis C, Remaud-Siméon M, André I. 2017. Isolation and characterization of an efficient mutant of Neisseria polysaccharea amylosucrase for the synthesis of controlled size maltooligosaccharides.Carbohydr. polymers,173: 403-411(IF = 5.326)
• Vergés A, Cambon E, Barbe S, Moulis C, Remaud-Siméon M, André I. 2017. Novel product specificity toward erlose and panose exhibited by multi-site engineered mutants of amylosucrase. Protein Sci., 26 (3) : 566-577 (IF = 2.778)
• Walther T, Topham C, Irague R, Auriol C, Baylac A, Cordier H, Dressaire C, Lozano-Huguet L, Martineau N, Stodel M, Malbert Y, Maestracci M, Huet R, André I, Remaud-Siméon M, François J-M. 2017. Construction of a synthetic methabolic pathway for biosynthesis of the non-natural methionine precursor 2,4-dihydroxybutyric acid. Nature Comm., 8:15828 (IF = 13.691)
• Wychowski A, Bompard C, Grimaud F, Potocki-Véronèse G, D’Hulst C, Wattebled F, Roussel X. 2017. Biochemical characterization of Arabidopsis thaliana Starch Branching Enzyme 2.2 reveals an enzymatic positive cooperativity. Biochimie. 140 :146-158. (IF = 3.058)

Revues

• Herrera-González A, Núñez-López G, Morel S, Amaya-Delgado L, Sandoval G, Gschaedler A, Remaud-Simeon M, Arrizon J. 2017. Functionalization of natural compounds by enzymatic fructosylation. Appl. Microbiol. Biotechnol., 101:5223-34. (IF = 3.602)
• Wilkens C, Andersen S, Dumon C, Berrin J-G, Svensson B. 2017. GH62 arabinofuranosidases: Structure, function and applications. Biotechnology Advances,35, 792-804. (IF = 11.848)

Chapitres d’ouvrages

• Wu H, Montanier CY, Dumon C. 2017. Quantifying CBM Carbohydrate Interactions Using Microscale Thermophoresis. “Protein-Carbohydrate Interactions”, Methods in Molecular Biology. Vol 1588, pp 129-141.
• Badruna L, Burlat V, Montanier CY. 2017. CBMs as Probes to Explore Plant Cell Wall Heterogeneity Using Immunocytochemistry. Protein-Carbohydrate Interactions, Methods in Molecular Biology. Vol 1588, pp 181-197.
• Tauzin AS., Laville E, Cecchini, D., Blottière HM, Leclerc M, Doré J, Potocki-Veronese G. 2017. Human Gut Metagenomics: Success and Limits of the Activity-Based Approaches. In Functional Metagenomics: Tools and Applications (pp. 161-178). Springer, Cham.
• Traoré S, Allouche D, André I, Schiex T, Barbe S. 2017. Deterministic search methods for Computational Protein Design. Computational Protein Design book, series Methods in Molecular Biology, Humana Press – Springer.  ISBN 978-1-4939-6637-0

• Andberg M, Aro-Karkkainen N, Carlson P, Oja M, Bozonnet S, Toivari M, Hakulinen N, O’Donohue M, Penttila M, Koivula A. 2016. Characterization and mutagenesis of two novel iron-sulphur cluster pentonate dehydratases. Applied Microbiology and Biotechnology, 100 (17): 7549-7563. (IF = 3.716)
• Abot A, Arnal G, Auer L, Lazuka A, Labourdette D, Lamarre S, Trouilh L, Laville E, Lombard V, Potocki-Veronese G, Henrissat B, O’Donohue M, Hernandez-Raquet G, Dumon C Anton Leberre V. 2016. CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. BMC Genomics, 17:671. (IF = 4.284)
• Bouraoui H, Desrousseaux M-L, Ioannou E, Alvira P, Manaï M, Rémond C, Dumon C, Fernandez-Fuentes N, O’Donohue M. 2016. The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolyzing main-chain and side-chain glycosidic bonds in heteroxylans. Biotechnol. for Biofuels , 9 (1) : 1-14. (IF = 6.732)
• Brison Y, Malbert Y, Czaplicki G, Mourey L, Remaud-Simeon M, Tranier S. 2016. Structural Insights into the Carbohydrate Binding Ability of an α-(1→ 2) Branching Sucrase from Glycoside Hydrolase Family 70. J. Biol. Chem., 291 (14): 7527-40. (IF = 4.323)
• Culbertson AT, Chou Y-H, Smith AL, Young ZT, Tietze AA, Cottaz S, Fauré R, Zabotina O.A. 2016. Enzymatic activity of arabidopsis xyloglucan xylosyltransferase 5. Plant Physiol. 171:1893-1904 (IF = 7.428)
• Durand J, Biarnés X, Watterlot L, Bonzom C, Borsenberger V, Planas A, Bozonnet S, O’Donohue MJ, Fauré R. 2016. A single point mutation alters the transglycosylation/hydrolysis partition, significantly enhancing the synthetic capability of an endo-glycoceramidase. ACS Catal., 6(12): 8264-8275 (IF = 10.945)
• Gherbovet O, Fauré R, Ferreira F, Durand J, Ragon M, Hostyn G, Record E, Bozonnet S, O’Donohue MJ. 2016. Design of chromogenic probes for efficient screening and evaluation of feruloyl esterase-like activities. J Mol. Catal. B: Enzym. 126:24-31 (IF = 2.328)
• Hoarau M, Malbert Y, Irague R, Hureau C, Faller P, Gras E, André I, Remaud-Siméon M. 2016. A robust and efficient production and purification procedure of recombinant Alzheimer’s disease amyloid-b peptides. PLoS One, 11(8): e0161209. (IF = 3.394)
• Koffi GY, M Remaud-Simeon M, AE Due AE, D Combes D. 2016. Isolation and chemoenzymatic treatment of glycoalkaloids from green, sprouting and rotting Solanum tuberosum potatoes for solanidine recovery. Food Chem., 220:257-265. (IF = 4.498)
• Maktouf S, Jeddou KB, Moulis C, Hajji H, Remaud-Simeon M, Ellouz-Ghorbel R . 2016. Evaluation of dough rheological properties and bread texture of pearl millet-wheat flour mix. Journal of Food Science and Technology, 1-6. (IF = 1.597)
• Moreau C, Cioci G, Iannello M, Laffly E, Chouquet A, Ferreira A, Thielens NM, Gaboriaud C. 2016. Structures of parasite calreticulins provide insights into their flexibility and dual carbohydrate/peptide-binding properties. IUCrJ, 3(Pt 6):408-419. (IF = 5. 819)
• Tauzin AS, Laville E, Xiao Y, Nouaille S, Le Bourgeois P, Heux S, Portais JC, Monsan P, Martens EC, Potocki-Veronese G, Bordes F. 2016. Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to E. coli. Mol. Microbiol., 102(4): 579-592 (IF = 4.135)
• Topham CM, Barbe S, André I. 2016. An Atomistic Statistical Effective Energy Function for Computational Protein Design. J. Chem. Theory Comput., 12(8):4146-68, 2016. (IF = 6.016)
• Traoré S, Roberts KE, Allouche D, Donald BR, André I, Schiex T, Barbe S. 2016. Fast search algorithms for Computational Protein Design. J. Comp. Chem., 12:1048-58.  (IF = 4.602)
• Vuillemin M, Claverie M, Brison Y, Séverac E, Bondy P, Morel S, Monsan P, Moulis C, Remaud-Siméon M. 2016. Characterization of the first α-(1→ 3) branching sucrases of GH70 family. J Biol Chem., 291(14):7687-702 (IF = 4.323)
• Wongwatanapaiboon J, Malilas W, Ruangchainikom C, Thummadetsak G, Chulalaksananukul S, Marty A, Chulalaksananukul W. 2016. Overexpression of Fusarium solani lipase in Pichia pastoris and its application in lipid degradation. Biotechnology and Biotechnical Equipment, 30 (5): 885-893 (IF = 0.699)
• Wongwatanapaiboon ., Klinbunga S, Ruangchainikom C, Thummadetsak G, Chulalaksananukul S, Marty A, Chulalaksananukul W. 2016. Cloning, expression, and characterization of Aureobasidium melanogenum lipase in Pichia pastoris. Biosci., Biotechnol. and Biochem., 80 (11): 2231-2240 (IF = 1.063)

Revues

• Ladevèze S, Laville E, Despres J, Mosoni P, Potocki-Véronèse G. 2016. Mannoside recognition and degradation by bacteria. Biological Reviews,92(4):1969-90. (IF = 11.740)
• Moulis C, André I, Remaud-Siméon M. 2016. GH13 amylosucrases and GH70 branching sucrases, atypical enzymes in their respective families. Cellular and Molecular Life Sciences, 73 (14):2661-2679. (IF = 5.643)

Proceedings

• Viricel C, Simoncini D, Barbe S, Schiex T. 2016. Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. In Principles and Practice of Constraint Programming: 22nd International Conference CP 2016 Full Research Paper. Springer International Publishing.

• Amari M, Gabriel V, Robert R, Morel S, Moulis C, Gabriel B, Remaud-Siméon M, Fontagné-Faucher C. 2015. Overview of the glucansucrase equipment of Leuconostoc citreum LBAE-E16 and LBAE-C11, two strains isolated from sourdough. FEMS microbiology letters, 362 (1): 1-8.   (IF = 2.056)
• Arab-Jaziri F, Bissaro B, Tellier C, Dion M, Fauré R, O’Donohue MJ. 2015. Enhancing the chemoenzymatic synthesis of arabinosylated xylo-oligosaccharides by GH51 α-l-arabinofuranosidase. Carbohydr. Res., 401:64-72 (IF = 2.023)
• Arnal G, Bastien G, Monties N, Abot A, Leberre VA, Bozonnet S, O’Donohue M, Dumon C. 2015. Investigating the Function of an Arabinan Utilization Locus Isolated from a Termite Gut Community. Appl. Environ. Microbiol., 81:31–39. (IF = 4.303)
• Bissaro B, Durand J, Biarnés X, Planas A, Monsan P, O’Donohue MJ, Fauré R. 2015. Molecular design of non-Leloir furanose-transferring enzymes from an α-l-arabinofuranosidase: a rationale for the engineering of evolved transglycosylases. ACS Catal., 5(8): 4598-4611 (IF = 9.874)
• Brissonnet Y, Ladevèze S, Tezé D, Fabre E, Deniaud D, Daligault F, Tellier C, Sesták S, Remaud-Simeon M, Potocki-Veronese G, Gouin SG. 2015. Polymeric iminosugars improve the activity of carbohydrate-processing enzymes. Bioconjugate chemistry, 26(4): 766-772 (IF = 4.558)
• Cecchini DA, Fauré R, Laville E, Potocki-Véronèse G. 2015. Biochemical identification of the catalytic residues of a glycoside hydrolase family 120 β-xylosidase, involved in xylooligosaccharide metabolisation by gut bacteria. FEBS Lett., 589:3098-3106. (IF = 3.478)
• Cuskin F, Davies G, Baslé A, Ladevèze S, Potocki-Véronèse G, Gilbert H, Lowe L. 2015. The GH130 family of mannosidase phosphorylases contains glycoside hydrolases. J. Biol. Chem., 290(41): 25023-25033. (IF = 4.403)
• Guo Z, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O’Donohue MJ. 2015. Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes. Biotechnol. Biofuels, 8:109 (IF = 7.398)
• Houser J, Komarek J, Cioci G, Varrot A, Imberty A, Wimmerova M. Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent. Acta Crystallogr. D., 71(Pt 3):442-53. (IF = 8.751)
• Ladevèze S, Cioci G, Roblin P, Mourey L, Tranier S, Potocki-Veronese G. 2015. Structural bases for N-glycan processing by mannoside phosphorylase. Acta Cryst. D, 71:1335–1346. (IF = 8.751)
• Lazuka A, Auer L, Bozonnet S, Morgavi DP, O’Donohue MJ, Hernandez-Raquet G. 2015. Efficient anaerobic transformation of raw wheat straw by a robust cow rumen-derived microbial consortium. Bioresource Technology, 196 : 241-249. (IF = 5.744)
• Maktouf S, Moulis C, Miled N, Chaabouni SE, Remaud-Simeon ., 2015. A highly thermostable lichenase from Bacillus sp UEB-S: Biochemical and molecular characterization, J.Mol. Cat. B: Enzymatic. 115:8-12 (IF = 2.352)
• Martinez T, Texier H, Nahoum V, Lafitte C, Cioci G, Heux L, Dumas B, O’Donohue M, Gaulin E, Dumon C. 2015. Probing the Functions of Carbohydrate Binding Modules in the CBEL Protein from the Oomycete Phytophthora parasitica. PLoS One, 10(9):e0137481.(IF = 3.535)
• Meunchan M, Michely S, Devillers H, Nicaud JM, Marty A, Neuvéglise C. Comprehensive Analysis of a Yeast Lipase Family in the Yarrowia Clade. PLoS One. 10(11):e0143096. (IF = 3.535)
• Nioi C, Riboul D, Destrac P, Marty A, Marchal L, Condoret JS. 2015. The centrifugal partition reactor, a novel intensified continuous reactor for liquid–liquid enzymatic reactions. Biochem. Eng. J., 103 : 227-233 (IF = 2.859)
• Passerini D, Vuillemin M, Ufarté L, Morel S, Loux V, Fontagné-Faucher C, Monsan P, Remaud-Siméon M, Moulis C. 2015. Inventory of the GH70 enzymes encoded by Leuconostoc citreum NRRL B-1299 – identification of three novel α-transglucosylases. FEBS J., 282(11): 2115-30. (IF = 4.082)
• Salamone S, Guerreiro C, Cambon E, André I, Remaud-Siméon M, Mulard LA. 2015. Programmed chemo-enzymatic synthesis of the oligosaccharide component of a carbohydrate-based antibacterial vaccine candidate. Chem. Comm. 51:2581-2584. (IF = 6.628)
• Salamone S, Guerreiro C, Cambon E, Hargreaves JM, Tarrat N, Remaud-Siméon M, André I, Mulard L. 2015. Chemo-enzymatic synthesis of Shigella flexneri–specific oligosaccharides using disaccharides as transglucosylase acceptor substrates, J. Org. Chem., 80(22):11237-57. (IF = 4.538)
• Simoncini D, Allouche D, de Givry S, Delmas C, Barbe S, Schiex T. Guaranteed Discrete Energy Optimization on Large Protein Design Problems. 2015. J. Chem. Theory Comput., 11(12):5980-9.  (IF = 5.756)
• Verges A, Cambon E, Barbe S, Salamone S, Le GuenY,Moulis C, Mulard LA, Remaud-Siméon M., André I. 2015. Computer-aided engineering of a transglucosylase for the glucosylation of an unnatural disaccharide of relevance for bacterial antigen synthesis. ACS Catalysis, 5(2): 1186-1198 (IF = 9.874)
• Vidal-Melgosa S, Pedersen HL, Schückel J, Arnal G, Dumon C, Amby DB, Monrad RN, Westereng B, Willats W G T. 2015. A new versatile microarray-based method for high throughput screening of carbohydrate-active enzymes. J. Biol. Chem., 290: 9020–9036* (IF = 4.403)

Revues

• Bissaro B, Monsan P, Fauré R, O’Donohue MJ. 2015. Glycosynthesis in a Waterworld: new insight into the molecular basis of transglycosylation in retaining glycoside hydrolases. Biochem. J., 467(1):17-35. (IF = 4.116)
• Heux S, Meynial-Salles I, O’Donohue MJ, Dumon C. 2015. White biotechnology: state of the art strategies for the development of biocatalysts for biorefining. Biotechnology Advances, 33(8):1653-70.(IF = 11.847)
• Larraufie P, de Wouters T,  Potocki-Veronese G, Blottière HM, Doré J. 2015. Functional metagenomics to decipher food-microbe-host crosstalk. Proceedings of the Nutrition Society, 74(1):1-4. (IF = 4.625)
• Ufarté L, Potocki-Véronèse G, Laville E. 2015. Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology. Frontiers in Microbiology, 6:563. (IF = 4.360)
• Ufarté L, Duquesne S, Laville E, Potocki-Veronese G. 2015. Metagenomics for the discovery of pollutant degrading enzymes. Biotechnology Advances,33(8): 1845-1854. (IF = 11.847)

Proceedings

• Viricel C, Simoncini D, Allouche D, De Givry S, Barbe S, Schiex T. 2015. Approximate counting with deterministic guarantees for affinity computation . In: Modelling, Computation and Optimization in Information Systems and Management Sciences (p. 165-176). Advances in Intelligent Systems and Computing, 360 (1ère édition). Full Research Paper Proceedings of the 3rd International Conference on MCO- 2015, Metz, FRA (2015-05-11 – 2015-05-13). CHE : Springer International Publishing.

Chapitres d’ouvrages

• Laville E, Ufarté L, Potocki-Veronese G. 2015. Découverte de nouvelles fonctions et familles protéiques : nouveaux défis pour les biotechnologies et l’écologie microbienne. In ‘La métagénomique : développements actuels et futures perspectives’. Ed. QUAE, collection Savoir Faire.35-49
• Lourdin D, Putaux JL, Potocki-Veronese G, Chevigny C,  Rolland-Sabaté A, Buléon A. 2015. Crystalline structure in starch. In Starch – Springer. Ed. Y. Nakamura. 61-90.
• Ufarté L, Bozonnet S, Laville E, Cecchini DA, Pizzut-Serin S, Jacquiod S, Demanèche S,  Simonet P, Franqueville L, Potocki-Veronese G. 2015. Functional metagenomics: construction and high-throughput screening of fosmid libraries for discovery of novel carbohydrate-active enzymes.  In Microbial Environmental Genomics (Methods in Molecular Biology) – Springer Series. Ed. F.M. Martin and S. Uroz. Methods Mol Biol. 2016;1399:257-71.

• Allouche D, André I, Barbe S, Davies J, de Givry S, Katsirelos G, O’Sullivan B, Prestwitch S, Schiex T, Traoré S. 2014. Computational Protein Design as an optimization Problem. Artif. Intell., 212:59-79. (IF = 3.726)
• Beopoulos A, Verbeke J, Bordes F, Guicherd M, Bressy M, Marty A, Nicaud JM. 2014. Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica. Applied Microbiol. Biotechnol. 98(1):251-62. (IF = 3.848)
• Berland M, Offmann B, André I, Remaud-Siméon M, Charton P. 2014. A web-based tool for rational screening of mutants libraries using ProSAR. Protein Engineering Design and Selection, 27:375-381. (IF = 2.604)
• Bissaro B, Saurel O, Arab-Jaziri F, Saulnier L, Milon A, Tenkanen M, Monsan P, O’Donohue MJ, Fauré R. 2014. Mutation of a pH-modulating residue in a GH51 a-l-arabinofuranosidase leads to a severe reduction of the secondary hydrolysis of transfuranosylation products. BBA-Gen. Subjects, 1840(1):626-636. (IF = 3.848)
• Borsenberger V, Dornez E, Desrousseaux M-L, Massou S, Tenkanen M, Courtin CM, Dumon C, O’Donohue MJ, Fauré R. 2014. A (1)H NMR study of the specificity of α-L-arabinofuranosidases on natural and unnatural substrates. Biochim. Biophys. Acta, 1840(10): 3106–3114. (IF = 4.555)
• Cambon E, Barbe S, Pizzut-Serin S, Remaud-Simeon M, André I. 2014. Essential role of amino acid position 226 in oligosaccharide elongation by amylosucrase from Neisseria polysaccharea. Biotechnol. Bioeng.,111:1719-1728. (IF = 4.289)
• Casas Godoy L, Meunchan M,  Cot M, Duquesne S, Bordes F, Marty A. 2014. Yarrowia lipolytica Lipase Lip2: an efficient enzyme for the production of Docosahexaenoic Acid Ethyl Esters Concentrates. J. Biotechnol., 180:30-36.  (IF = 3.180)
• Dimopoulou M, Vuillemin M, Campbell-Sills H, Lucas P, Ballestra P, Miot-Sertier C, Favier M, Coulon J, Moine V, Doco T, Roques M, Williams P, Petrel M, Gontier E, Moulis C, Remaud-Simeon M, Dols-Lafargue M. 2014. Exopolysaccharide (EPS) Synthesis by Oenococcus oeni: From Genes to Phenotypes. PloS One, 9(6) : e98898. (IF = 3.702)
• Duquesne S, Bozonnet S, Bordes F, Dumon C, Nicaud JM, Marty A. 2014. Construction of a highly active xylanase displaying oleaginous yeast: Comparison of anchoring systems. PLoS One, 9(4):e95128.  (IF = 3.702)
• Malbert Y, Pizzut-Serin S, Massou S, Cambon E, Laguerre S, Monsan P, Lefoulon F, Morel S, André I, Remaud-Simeon M. 2014. Extending the structural diversity of a-flavonoïd glycosides with engineered glucansucrases. ChemCatChem., 6(8):2282-2291. (IF = 5.213)
• Nars G, Saurel O, Bordes F, Saves I, Remaud-Simeon M, André I, Milon A, Marty A. 2014. Production of stable isotope labelled lipase Lip2 from Yarrowia lipolytica for NMR studies. Protein Expr. Purif., 101:14-20. (IF = 1.617)
• Passerini D., Vuillemin M., Laguerre S., Amari M., Loux V., Gabriel V., Robert H., Morel S., Monsan P., Gabriel B., Fontagné-Faucher C, Remaud-Siméon M, Moulis C. 2014. Genome Announc., 26 :2(6) :e01179-14
• Rolland-Sabaté A, Guilois S, Grimaud F, Lancelon-Pin C, Roussel X, Vilso-Nielsen A, Putaux JL, Dhulst C, Potocki-Veronese G, Buleon A. 2014. Characterization of hyperbranched glycopolymers produced in vitro using enzymes. Anal. Bioanal. Chem., 406:1607-1618. (IF = 3.565)
• Siguier B, Haon M, Nahoum V, Marcellin M, Burlet-Schiltz O, Coutinho PM, Henrissat B, Mourey L, Donohue MJ, Berrin JG, Tranier S, Dumon C. 2014. First structural insights into α-l-arabinofuranosidases from the two GH62 glycoside hydrolase subfamilies. J. Biol. Chem., 289(8):5261-5273. (IF = 4.693)
• Song L, Dumon C, Siguier B, André I, Eneyskaya EV, Kulminskaya A, Bozonnet S, O’Donohue MJ. 2014. Impact of an N-terminal extension on the stability and activity of the GH11 xylanase from Thermobacillus xylanilyticus. J. Biotechnol., 174:64-72. (IF = 3.180)
• Vuillemin M, Malbert Y, Laguerre S, Remaud-Simeon M, Moulis C. 2014. Optimizing the production of an a-(1→2) branching sucrase in Escherichia coli using statistical design. Appl Microbiol Biotechnol., 98:5173-5184 . (IF = 3.848)

Revues

• André I, Potocki-Véronèse G, Barbe S, Moulis C, Remaud-Simeon M. 2014. CAZyme discovery and design for sweet dreams. Curr. Opin. Chem. Biol., 19:17-24. (IF = 8.189)
• Wijffels R, Sanders J, van Boxtel T, O’Donohue M. 2014. Biorefineries for food, fuels and materials. Biofuels, Bioproducts and Biorefining, 8 (4) :453 – 455. (IF = 5.482)

Chapitres d’ouvrages

• Arrizon J., Urias-Silvas J E., Sandoval G., Mancilla-Margalli N J., Gschaedler A., Morel S., Monsan P., 2014. Production and bioactivity of Fructan-Type Oligosaccharides. Food Oligosaccharides: Production, Analysis and Bioactivity. 184-196. Ed John Wiley & Sons.
• Daudé D, André I, Monsan P, Remaud-Simeon M. 2014. Successes in engineering glucansucrases to enhance glycodiversification. Royal Society of Chemistry book series, Carbohydr. Chem., 40, 624–645

• Amari. M, Gomez Arango. L F, Gabriel. V, Robert. H, C, Morel. S, Moulis. C, Gabriel. B, Remaud-Siméon. M, Fontagné-Faucher. C. 2013. Characterization of a novel dextransucrase from Weissella confuse isolated from sourdough. Appl Microbiol Biot. 97 (12) : 5413-5422 (JCR = 3.689)
•  Arab-Jaziri F., Bissaro B., Dion M., Saurel O., Harrison D., Ferreira F., Milon A., Tellier C., Fauré R., O’Donohue M.J. (2013) Engineering transglycosidase activity into a GH51 α-l-arabinofuranosidase. New Biotechnol. 30(5), 536-544 (JCR = 2.756)
•  Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Fauré R, Henrissat H, Lefèvre F, Robe P, Bouchez O, Noirot C, Dumon C, O’Donohue M. Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. Biotechnology for Biofuels, 2013, 6:78 (JCR 6.088).
•  Bejar. W,  Gabriel. V, Amari. M, Morel. S, Mezghani. M, Maguin. E,  Fontagné-Faucher. C, Bejar. S, Chouayekh. Characterization of glucansucrase and dextran from Weissella sp. TN610 with potential as safe food additives. H. Int J Biol Macromo, 2013, 52, 125-132 (JCR = 1.867)
•  Boonvitthya, N., Burapatana, V.,  Bozonnet, S., O’Donohue,  M.  J. and Chulalaksananukul, W. (2013) Comparison of the heterologous expression of Trichoderma reesei endoglucanase II and cellobiohydrolase II in the yeasts Pichia pastoris and Yarrowia lipolytica. MolBiotechnol. Jun;54(2):158-69. (IF = 2.171).
•  Borsenberger V., Dornez E., Desrousseaux M.-L., Courtin C.M., O’Donohue M.J., Fauré R. (2013) A substrate for the detection of broad specificity α-l-arabinofuranosidases with indirect release of a chromogenic group. Tetrahedron Lett. 2013, 54(24), 3063-3066 (JRC = 2.683)
•  Bouraoui H, Rebib H, Ben Aissa M, Touzel JP, O’donohue M, Manai M. (2013) Paenibacillus marinum sp. nov., a thermophilic xylanolytic bacterium isolated from a marine hot spring in Tunisia. J. Basic Microb. 53(11):877-883. (JRC = 1.198)
•  Brison Y, Laguerre S, Lefoulon F, Morel S, Monties N, Potocki-Veronèse G, Monsan P, Remaud-simeon M. Branching pattern of gluco-oligosaccharides and 1.5 kDa dextran grafted by the a-1,2 branching sucrase GBD-CD2. 2013. DOI Carbohydr Polym (JCR = 3.628)
•  Casas-Godoy L., Marty A., Sandoval G., Ferreira-Dias S. (2013) Optimization of medium chain length fatty acid incorporation into olive oil catalyzed by immobilized Lip2 from Yarrowia lipolytica, Biochemical Engineering Journal 77 (2013) 20– 27 (IF 2,98)
•  Cecchini D., E. Laville, S. Laguerre, P. Robe, M. Leclerc, J. Doré, B. Henrissat, M.Remaud-Simeon, P. Monsan and G. Potocki-Veronese. 2013. Functional metagenomics reveals novel pathways of prebiotic metabolisation by human gut bacteria. PLOS One 8(9): e72766. doi:10.1371/journal.pone.0072766 (IF = 4.09)
•  Couturier M, Féliu J, Bozonnet S, Roussel A, Berrin JG. Molecular engineering of fungal GH5 and GH26 beta-(1,4)-mannanases toward improvement of enzyme activity. PLOS One. 2013 Nov 22;8(11) e79800. doi:10.1371/journal.pone.0079800. (IF = 4.09)
• Daudé D., Champion E., Morel S., Guieysse D., Remaud-Siméon M. and André I. 2013. Probing substrate promiscuity of amylosucrase from Neisseria polysaccharea. ChemCatChem. 8, 2288-2295. (JCR = 5.18)
• Daudé D. Topham C., Remaud-Siméon M., and André I. 2013. Probing impact of active site residue mutations on stability and activity of Neisseria polysaccharea amylosucrase. Protein Sci. 22, 1754-1765 (JCR = 2.73)
• Elgue S., Conté A., Condoret J.S., Marty A. 2013 Continuous lipase esterification using Process Intensification technologies.  Journal of Chemical Technology & Biotechnology. DOI 10.1002/jctb.4247 (JCR = 2.5)
• Elgue S., Conté A, Marty A. and Condoret J.S. (2013) Two-phase enzymatic reaction using Process Intensification technologies. Chemistry today vol. 31(6) (JCR 0.54).
• Grimaud F., Lancelon-Pin C., Rolland-Sabaté A., Roussel X., Laguerre S., Viksø-Nielsen A., Putaux JL., Guilois S., Buléon A., D’Hulst C., Potocki-Véronèse G. In vitro synthesis of hyperbranched alpha-glucans using a biomimetic enzymatic toolbox, Biomacromolecules 2013 Feb 11;14(2):438-47. (JCR = 5.479)
• Irague, R., Tarquis L., André I., Moulis C., Morel S. , Monsan P., Potocki-Veronese G. and Remaud-Simeon M. 2013. Combinatorial engineering of dextransucrase specificity. PLOS One 8(10): e77837. doi:10.1371/journal.pone.0077837 (IF = 4.09)
• Ladevèze S. , Tarquis L., Cecchini D.A., Bercovici J., André I., Topham C.M., Morel S., Laville E.,  Monsan P., Lombard V., Henrissat B., and Potocki-Véronèse G. 2013. Role of glycoside-phopshorylases in mannose foraging by human gut bacteria. J. Biol. Chem., 288:32370-32383. (IF 5.33)
• Maktouf S, Moulis C, Kamoun A, Chaari F, Chaabouni SE, Remaud-Simeon M., A laundry detergent compatible lichenase: Statistical optimization for production under solid state fermentation on crude millet. 2013. Industrial Crops and Products 43, 349-354 (JCR 2.87)
• Maktouf S, Kamoun A, Moulis C, Remaud-Simeon M, Ghribi D, Chaabouni SE. (2013). A new raw-starch-digesting a-amylase: production under solid-state fermentation on crude millet and biochemical characterization. J Microbiol Biotechnol. 2013 Apr;23(4):489-98.
• Marris, C.; Heams, T.; Kepes, F.; Campos, L.; Monsan, P.; Toussaint, J. F.; Benoit-Browaeys, D.; Haiech, J.; Alix, J. P.; Fellous, M.Marris et al. (2013) Measuring an Open and Responsible Culture Discussion. MS-Medicine Sciences.
• Monsan P. (2013) Characterization of the scientific dynamic of synthetic biology Introduction. MS-Medicine Sciences.
• Monsan P. (2013) Les biotechnologies blanches : révolution… ou évolution ? L’Actualité Chimique, juin-juillet-août 2013, N° 375-376, 17-23.
• Monsan, P.; Bayer, T.; Alix, J. P.; Marris, C.; Aguiton, S.; de Brem, P.; la Salle, D.; Cerisy, T.; Margerit, S. (2013) Analysing the Contributions of Social Sciences Discussion. MS-Medicine Sciences.
• Monsan, P. Lepargneur J.P. (2013) Les prébiotiques. In « Actualités permanentes en microbiologie clinique », Section III, Chapitre 17, Editions Eska, Paris.
• Park, J. M.; Kondo, A.; Chang, J. S.; Chou, C. P.; Monsan, P. (2013) Biorefineries. Bioresource Technology.
• Rivera I., Mateos J.C., Marty A., Sandoval G., Duquesne S. 2013. Lipase from Carica papaya latex presents high enantioselectivity towards the resolution of prodrug 2-bromo-phenylacetic acid octyl ester. Tetrahedron Letters; 54, 5523-5526. (JCR = 2.683)
• Roblin P., Potocki-Veronese G., Guieysse D., Guérin F., Axelos M., J. Perez,  Buleon A.(2012), SAXS conformational tracking of amylose synthesized by amylosucrases. Biomacromolecules. 2013 Jan 14;14(1):232-9. (JCR = 5.478)
• Roussel X., Lancelon-Pin C., Viksø-Nielsen A.,  Rolland-Sabaté A.,  Grimaud F.,  Potocki-Véronèse G., Buléon A.,  Putaux JL., D’Hulst C.,  Characterization of substrate and product specificity of the purified recombinant glycogen Branching Enzyme of Rhodothermus obamensis, Biochim Biophys Acta. 2013 Jan;1830(1):2167-77. (JCR = 5.0)
• Skov LK, Pizzut-Serin S, Remaud-Simeon M, Ernst HA, Gajhede M, Mirza O. The structure of amylosucrase from Deinococcusradiodurans has an unusual open active-site topology. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 . 69(9):973-8.
• Topham C., Rouquier M., Tarrat N. and André I. 2013. Adaptive Smith-Waterman Residue Match Seeding for Protein Structural Alignment. Proteins : Structure, Function, and Bioinformatics. 81(10), 1823-1839 (JCR = 3.33)
• Traoré S., Allouche D., André I., de Givry S., Katsirelos G., Schiex T. and Barbe S. 2013.  A New Framework for Computational Protein Design through Cost Function Network Optimization. Bioinformatics. 29(17), 2129-2136 (JCR = 5.32)
• Zhang H., Fauré R., François J.-M., Blanc P.J., de Billerbeck G.M. (2013) Xylosylation as an effective means for reducing yeast growth inhibition by 2-phenylethanol. J. Basic Microb. 53(9), 792-795 (JRC = 1.266)