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Production scientifique


  • Alfonso-Prieto M., Potocki-Véronèse G., Cuxart I., André I., Rovira C. 2023. Substrate-Assisted Mechanism for the Degradation of N-glycans by a Gut Bacterial Mannoside Phosphorylase. ACS Catalysis (JCR=13.70) in press DOI:10.1021/acscatal.3c00451**
  • Artico M., Roux C., Péruch F., Mongotaud A.F. and Montanier C. Y.. Grafting of proteins onto polymeric surfaces: a synthesis and characterization challenge. Biotechnology Advances, Volume 64, 2023, 108106. (JCR=17.68)  DOI: 10.1016/j.biotechadv.2023.108106) *
  • Barba-Cedillo V. and Montanier C. Y.. Effect of multi-modularity and spatial organization of glycoside hydrolases on catalysis. Essays Biochem 2023; EBC20220167. (JCR = 7.26) DOI: 10.1042/EBC20220167)
  • Blosse S., Bouchoux A., Montanier C.Y. and  Duru P.. X-Ray Microtomography Reveals the 3D Enzymatic Deconstruction Pathway of Raw Lignocellulosic Biomass. Bioresource Technology Reports, Volume 21, 2023, 101351. (JCR = 4.82).*  DOI: 10.1016/j.biteb.2023.101351 *#
  • Labourel, A., Parrou, J. L., Deraison, C., Mercier-Bonin, M., Lajus, S., & Potocki-Veronese, G. (2023). O-Mucin-degrading carbohydrate-active enzymes and their possible implication in inflammatory bowel diseases. Essays in Biochemistry 2023, EBC20220153 (JCR = 7.26). DOI: 10.1042/EBC20220153 *
  • Sicard, J., Barbe S., Boutrou R., Bouvier L., Delaplace G., Lashermes G., Théron L., Vitrac O., Tonda A. 2023. A primer on predictive techniques for food and bioresources transformation processes. Journal of Food Process Engineering. In press
  • Tournier V., Duquesne S., Guillamot F., Cramail H., Taton D., Marty A. André I. 2023. Enzymes power for plastics degradation. Chemical Reviews (JCR=72.087) In press. DOI: 10.1021/acs.chemrev.2c00644*
  • Bouchiba Y., Esque J., Cottret L., Maréchaux M., Gaston M., Gasciolli V., Keller J., Nouwen N., Gully D., Arrighi J-F., Gough C., Lefebvre B., Barbe S., Bono J-J. An integrated approach reveals how lipo-chitooligosaccharides interact with the lysin motif receptor-like kinase MtLYR3. Protein Sci., 31 e4327 (JCR = 6.725).*

  • Charlier C., Gavalda S., Borsenberger V., Duquesne S., Marty A., Tournier V., Lippens G. 2022. An NMR look at an engineered PET depolymerase. Biophys. J. (JCR = 4.033) 121(15): 2882-2894. doi: 10.1016/j.bpj.2022.07.002*

  • Guo H.; Wang L.; Su L.; Chen S.; Xia W.; André I.; Rovira C.; Wang B.; Wu J. 2022 A Single Hydrogen Bond Controls the Selectivity of Transglycosylation vs Hydrolysis in Family 13 Glycoside Hydrolases. J. Phys. Chem. Lett. 13:5626-5632 (JCR =6.888) 10.1021/acs.jpclett.2c01136 **

  • Khanh Le C. A., Ogawa Y., Grimaud F., Nishiyama Y., Morfin I., Potocki-Veronese G., Choisnard L., Wouessidjewe D., Putaux J.L., (2022). Helical inclusion complexes of amylose with aromatic compounds: crystallographic evidence for new V-type allomorphs. Crystal Growth & Design, 22(12), 7079-7089. (JCR = 4.01) *

  • Launay R., Teppa E., Martins C., Abby S., Pierrel F., André I., Esque J. 2022 Towards molecular understanding of the functional role of UbiJ-UbiK2 complex in ubiquinone biosynthesis by multiscale molecular modelling studies. IJMS (JCR = 6.208) 23 : 10323.*

  • Li A., Benkoulouche M., Ladeveze S., Durand J., Cioci G., Laville E., Potocki-Veronese G. 2022. Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases. IJMS 23(6):3043. (JCR = 6.208) doi: 10.3390/ijms23063043.

  • Penttinen L., Kouhi V., Fauré R., Skarina T., Stogios P., Master E., Jurak E. 2022 Elucidating sequence and structural determinants of carbohydrate esterases for complete deacetylation of substituted xylans. Molecules (JCR = 4.927) 27(9):2655.** doi: 10.3390/molecules27092655

  • Chen, X., T, R., Esque, J. et al. Total enzymatic synthesis of cis-α-irone from a simple carbon source. Nat Commun 13, 7421 (2022).
  • Cox N., Charlier C., Vijayaraj R., De La Mare M., Barbe S., André I., Lippens G. Montanier C.Y. 2022 The covalent complex of JO-In results from a long-lived, non-covalent intermediate state with near-native structure. Biochem. & Biophys. Res. Comm. (JCR = 3.575) In press DOI : 10.1016/j.bbrc.2021.12.028
  • Ropartz D., Fanuel M., Lissarrague A., Ollivier S., Benkoulouche M., Mulard L.A., André I., Guieysse D., Rogniaux H. 2022. Combination of high resolution multi-stage ion mobility and tandem MS with high energy of activation to resolve the structure of complex chemo-enzymatically synthesized glycans. Anal. Chem. (JCR = 6.785) In press*
  • Tauzin A.S., Wang Z., Cioci G., Li X., Labourel A., Machado B., Lippens G. and Potocki-Veronese
    2022. Structural and biochemical characterization of a non-binding
    SusD-like protein involved in xylooligosaccharide utilization by a human gut uncultured Bacteroides.
    mSphere. 7(5), e00244-22. (IF 5.029)**#

  • Wang T., Tauzin A.S., Laville E. and Potocki-Veronese G. 2022. Identification of glycoside transporters from the human gut microbiome. Frontiers in Microbiology 13, 816462. (IF 6.064) doi: 10.3389/fmicb.2022.816462

  • Badruna, L.; Burlat, V.; Roblin, P.; Enjalbert, T.; Lippens, G.; Venditto, I.; O’Donohue, M. J.; Montanier, C. Y. The Jo-In Protein Welding System Is a Relevant Tool to Create CBM-Containing Plant Cell Wall Degrading Enzymes. N Biotechnol 2021, 65, 31–41. (IF= 5.079)
  • Bardou, P.; Laguerre, S.; Haddad, S. M.; Rodriguez, S. L.; Laville, E.; Dumon, C.; Potocki-Veronese, G.; Klopp, C. MINTIA: A Metagenomic INserT Integrated Assembly and Annotation Tool. PeerJ 2021, 9, e11885. (IF= 3.369)
  • Benkoulouche M., Ben Imeddourene A., Barel L.-A., Le Heiget G., Pizzut S., Kulyk H., Bellvert F., Bozonnet S., Mulard L.A., Remaud-Siméon M., Moulis C. André I. 2021. Redirecting substrate regioselectivity using engineered ΔN123-GBD-CD2 branching sucrases for the production of pentasaccharide repeating units of S. flexneri 3a, 4a and 4b haptens. Sci. Rep. 11 :2474 DOI : 10.1038/s41598-021-81719-1  (JCR = 4.576) *#Metatoul, ICEO
  • Benkoulouche M., Ben Imeddourene A., Barel L.-A., Lefebvre D., Fanuel M., Rogniaux H., Ropartz D., Barbe S., Guieysse D., Mulard L.A., Remaud-Siméon M., Moulis C. André I. 2021. Computer-aided engineering of a branching sucrase for the glucodiversification of a tetrasaccharide precursor of S. flexneri antigenic oligosaccharides. Sci. Rep.11 :20294 (JCR = 4.576) DOI : 10.1038/s41598-021-99384-9*
  • Bouchiba Y, Cortés J., Schiex T, Barbe S. 2021 Molecular Flexibility in Computational Protein Design: An algorithmic perspective. PEDS, 34 (IF= 2.05) DOI: 10.1093/protein/gzab011*
  • Boudsocq F., Salhi M., Barbe S., Bouet J-Y. 2021 Three ParA dimers cooperatively assemble on type Ia partition promoters. Genes, 12,9:1345. (IF= 4.09) DOI: 10.3390/genes12091345*
  • Defresne M, Barbe S, Schiex T. 2021 Protein Design with Deep Learning. Int. J. Mol. Sci. 22, 11741. (IF= 5.9) DOI:
  • Desmons S., Grayson-Steel K., Nuñez-Dallos N., Vendier L., Hurtado J., Clapés P., Fauré R., Dumon C., Bontemps S. 2021. Enantioselective reductive oligomerization of carbon dioxide into L-erythrulose via a chemo-enzymatic catalysis. J. Am. Chem. Soc. 143:16274-16283 (IF = 15.42) DOI: 10.1021/jacs.1c07872*,**
  • Gherbovet O., Ferreira F., Clément A., Ragon M., Durand J., Bozonnet S., O’Donohue M.J., Fauré R. 2021 Regioselective chemo-enzymatic syntheses of chromogenic substrates for feruloyl esterases. Beilstein J. Org. Chem. 17:325-333 (IF = 2.88) DOI: 10.3762/bjoc.17.30
  • Hameleers L., Penttinen L., Ikonen M., Jaillot L., Fauré R., Terrapon N., Hakulinen N., Master E.R., Jurak E. 2021 Polysaccharide Utilization Loci-driven enzyme discovery reveals BD-FAE – a bifunctional feruloyl and acetyl xylan esterase active on complex natural xylan from corn fiber. Biotechnol. Biofuels 14:127 (IF = 6.04) DOI: 10.1186/s13068-021-01976-0**
  • Herrera-González A., Núñez-López, G., Amaya-Delgado L., Gschaedler A., Sandoval G., Remaud-Simeon M, Morel S., Arrizon, J., Hernández L 2021 Enzymatic synthesis of novel phlorizin fructosides Enzyme Microb Technol. 147, 109783 (IF : 2,932) ** Cuba
  • Molina M., Cioci G., Moulis C., Séverac E., Remaud-Siméon M., 2021. Bacterial α-Glucan and Branching Sucrases from GH70 Family: Discovery, Structure–Function Relationship Studies and Engineering. Microorganisms. 9, 1607.
  • Moulis, David Guieysse, Sandrine Morel, Etienne Séverac, Magali Remaud-Siméon (2020) Natural and engineered transglycosylases: Green tools for the enzyme-based synthesis of glycoproducts. Current Opinion in Chem Biol. 61: 96-106. (IF: 9.7)
  • Ollivier S., Tarquis L., Fanuel M., Li A., Durand J., Laville E., Potocki-Veronese G.,* Ropartz D.,* Rogniaux H..  Anomeric Retention of Carbohydrates in Multistage Cyclic Ion Mobility (IMSn): De Novo Structural Elucidation of
  • Enzymatically Produced Mannosides. Anal. Chem. 2021, 93, 6254-6261. (JCR = 6.785)*
  • Pelus A., Bordes G., Barbe S., Bouchiba Y., Burnard C., Cortes J., Enjalbert B., Esque J., Estaña A., Fauré R., Henras A., Heux S., Lemen C., Millard P., Nouaille S., Pérochon J., Toanen M., Truan G., Verdier A., Wagner C., Romeo Y., Montanier C. A tripartite carbohydrate-binding module to functionalize cellulose nanocrystal. Biomater. Sci. 9:7444-7455 (IF = 6.84) DOI: 10.1039/D1BM01156A*,#
  • Ruffini M., Vucinic J., de Givry S., Katsirelos G., Barbe S., Schiex T. 2021 Guaranted Diversity and Optimality in Cost Function Network Based Computational Protein Design Methods. Algorithms. 14, 168. (IF=2.27) DOI: 10.3390/a14060168*
  • Teze D., Zhao J., Wiemann M., Ara K.Z.G., Lupo R., Zeuner B., Vuillemin M., Rønne M.E., Carlström G., Duus J.Ø., Sanejouand Y.-H., O’Donohue M.J., Nordberg Karlsson E., Fauré R., Stålbrand H., Svensson B. 2021 Rational enzyme design without structural knowledge: a sequence-based approach to generate efficient transglycosylases. Chem. Eur. J. 27:10323-10334 (IF = 5.24) DOI: 10.1002/chem.202100110**
  • Tournois M., Mathé S. André I., Esque J., Fernandez M.A. 2021. Surface charge distribution: a key parameter for understanding protein behavior in chromatographic processes. J. of chromatography A. In press DOI: 10.1016/j.chroma.2021.462151 IF=4.169) #EAD10
  • Vucinic J., Novikov G., Montanier C.Y., Dumon C., Schiex T. Barbe S. 2021 A comparative study to decipher the structural and dynamics determinants underlying the activity and thermal stability of GH-11 xylanases. Int. J. Mol. Sci. 22, 5961. (JCR = 5.9). DOI: 10.3390/ijms22115961.
  • Wu, H.; Ioannou, E.; Henrissat, B.; Montanier, C. Y.; Bozonnet, S.; O’Donohue, M. J.; Dumon, C. Multimodularity of a GH10 Xylanase Found in the Termite Gut Metagenome. Appl Environ Microbiol 2021, 87 (3). (IF= 5.26)
  • Yagi S., Padhi A. K., Vucinic J., Barbe S., Schiex T., Nakagawa R., Simoncini D., Zhang K. YJ., Tagami S. 2021 Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase. J. Am. Chem. Soc. 143, 39:15998-16006 (IF = 15.42) DOI: 10.1021/jacs.1c05367**
  • Zhang F., Labourel A., Haon M., Kemppainen M., Da Silva Machado E., Brouilly N., Veneault-Fourrey C., Kohler A., Rosso M-N., Pardo A., Henrissat B., Berrin J-G. and Martin F. 2021. The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role in symbiosis establishment. New Phytol. (IF=8.512) doi: 10.1111/nph.17940**
  • Zhao J., Esque J., André I., O’Donohue M.J., Fauré R. 2021. Synthesis of α-l-Araf and β-d-Galf series furanobiosides using mutants of a GH51 α-l-arabinofuranosidase. Bioorg. Chem. 116:105245 (IF = 5.28) DOI: 10.1016/j.bioorg.2021.105245
  • Zhao J., Tandrup T., Bissaro B., Barbe S., Poulsen J.-C., André I., Dumon C., Lo Leggio L., O’Donohue M.J., Fauré R. 2021. Probing the determinants of the transglycosylation/hydrolysis partition in a retaining α-l-arabinofuranosidase. New Biotechnol. 62:68-78 (IF = 5.08) DOI: 10.1016/j.nbt.2021.01.008**
  • Borsenberger V., Croux C., Daboussi F., Neuvéglise C., Bordes F. 2020. Developing Methods to Circumvent the Conundrum of Chromosomal Rearrangements Occurring in Multiplex Gene Edition. ACS Synth Biol. 2020 Aug 7. doi: 10.1021/acssynbio.0c00325 (IF=5.571)
  • Bourlieu, C., Astruc, T., Barbe, S., Berrin, JG., Bonnin, E., Boutrou, R., Hugouvieux, V., Le Feunteun, S., Paës, G. (2020) Enzymes to unravel bioproducts architecture. Biotechnoly Advances, 41, 107546. (IF : 13.59).
  • Claverie M, Cioci G, Vuillemin M, Bondy P, Remaud-Simeon M and Moulis C. 2020. Processivity of dextransucrases synthesizing very high molar mass dextran is mediated by sugar-binding pockets of domain V. Journal of Biological Chemistry,  295 (17), 5602-5613. (IF:4,010)
  • Enjalbert, T., De La Mare, M., Roblin, P., Badruna, L., Vernet, T., Dumon, C., and Montanier, C. Y. 2020 Characterisation of the Effect of the Spatial Organisation of Hemicellulases on the Hydrolysis of Plant Biomass Polymer. Int J Mol Sci. 10.3390/ijms21124360 (IF=4.653)*
  • Guo Z., Borsenberger V., Croux C., Duquesne S., Truan G., Marty A., Bordes F. 2020,. An Artificial Chromosome ylAC Enables Efficient Assembly of Multiple Genes in Yarrowia Lipolytica for Biomanufacturing. Commun Biol Apr 29;3(1):199 (IF not available yet) *, #
  • Hu Z., Benkoulouche M., Barel L.A., Le Heiget G., Ben Imeddourene A., Le Guen Y., Monties N., Guerreiro C., Remaud-Siméon M., Moulis C., André I., Mulard L. 2020. A convergent chemoenzymatic strategy to deliver a diversity of Shigella flexneri serotype-specific O-antigen segments from a unique lightly protected tetrasaccharide core. J. Org Chem. 2021, 86, 3, 2058–2075 DOI: 10.1021/acs.joc.0c00777 (IF = 4.805)
  • Lafond M. Tauzin A., Bruel L., Laville E., Lombard V., Esque J., André I., Vidal N., Pompeo F., Quinson N., Perrier J., Fons M., Potocki-Véronèse G., Giardina T. 2020. α-Galactosidase and Sucrose-Kinase Relationships in a Bi-functional AgaSK Enzyme Produced by the Human Gut Symbiont Ruminococcus gnavus E1. Frontiers in Microbiology. 11, 2827 (JCR = 4.076) DOI: 10.3389/fmicb.2020.579521*
  • Lajus S., Dusséaux S., Verbeke J., Rigouin C., Guo Z., Fatarova M., Bellvert F., Borsenberger V., Bressy M., Nicaud JM., Marty A., Bordes F. 2020 Engineering the yeast Yarrowia lipolytica for production of polylactic acid homopolymer. Front Bioeng Biotechnol. Oct 22;8:954. doi: 10.3389/fbioe.2020.00954 (IF=4.21- not referenced in INRA referentiel) *
  • Li J, Zhong H, Ramayo-Caldas Y, Terrapon N, Lombard V, Potocki-Veronese G, Estelle-Fabrellas J, Popova M, Yang Z, Zhang H, Li F, Tang S, Chen W, Chen B, Li J, Guo J,  Martin C, Maguin E, Xu X, Yang H, Wang J, Madsen L, Kristiansen K, Henrissat B, Ehrlich SD,  Morgavi DP. 2020. A catalog of microbial genes from the bovine rumen reveals the determinants of herbivory. GigaScience, Gigascience 9 (6). (JCR = 6.95) DOI : 10.1093/gigascience/giaa057*, **
  • Li A., Laville E., Tarquis L., Lombard V., Ropartz D., Terrapon N., Henrissat B., Guieysse D., Esque J., Durand J., Morgavi D.P., Potocki-Veronese G. 2020. Analysis of the diversity of the glycoside hydrolase family 130 in mammal gut microbiomes reveals a novel mannoside-phosphorylase function. Microbial Genomics, mgen000404. (JCR = 5.52) DOI: 10.1099/mgen.0.000404*
  • Molina M, Moulis C, Monties N, Guieysse G, Morel S, Cioci G, Remaud-Siméon M. 2020, A specific oligosaccharides-     binding site in the alternansucrase catalytic domain mediates alternan elongation J Biol Chem,  295, 9474-9489 (IF : 4,010)*
  • Núñez-López G., Morel S. , Hernández L., Musacchio A., Amaya-Delgado L., Gschaedler A., Remaud-Simeon M., Arrizon J. 2020 One-pot bi-enzymatic cascade synthesis of puerarin polyfructosides. Carbohydrate Polymers 247, 116710 IF : 5,158)** Mexique
  • Park YK., Bordes F., Letisse F., Nicaud JM. Engineering precursor pools for increasing production of odd-chain fatty acids in Yarrowia lipolytica. 2020. Metab Eng Commun. 2020 Dec 19;12:e00158. doi: 10.1016/j.mec.2020.e00158. eCollection 2021 Jun. (IF not available yet)*, #
  • Petit D, Teppa RE, Harduin-Lepers A. 2020; A phylogenetic view and functional annotation of the animal β1,3-glycosyltransferases of the GT31 CAZy family. Glycobiology (IF:4.060) DOI: 10.1093/glycob/cwaa086.  PMID: 32886776.*
  • Sarrade-Loucheur A., Ro D.-K., Fauré R., Remaud-Siméon M., Truan G. Synthetic derivatives of (+)-epi-α-bisabolol are formed by mammalian cytochromes P450 expressed in a yeast reconstituted pathway. ACS Synthetic Biology 9 (2), 368-380  (IF = 5.57)**, #EAD11
  • Stevens, J. C., Rodgers, D. W., Dumon, C., and Shi, J. 2020 Characterization and Enzyme Engineering of a Hyperthermophilic Laccase Toward Improving Its Activity in Ionic Liquid. Front. Energy Res. 8, 158 (IF 2019 = 2.746) ** USA
  • Tauzin A.S., Rangel Pereira M., Van Vliet L., Colin P.Y., Laville E., Esque J., Laguerre S., Henrissat B., Terrapon N., Lombard V., Samain E., Leclerc M., Doré J., Hollfelder F. and Potocki-Veronese G. 2020. Investigating the host-microbiome crosstalk by droplet based microfluidics.  Microbiome 8, 141 (2020). DOI :10.1186/s40168-020-00911-z (JCR 11.61) #EAD4, *,**
  • Tournier V, Topham CM, Gilles A, David B, Folgoas C, Moya-Leclair E, Kamionka E, Desrousseaux ML, Texier H, Gavalda S, Cot M, Guémard E, Dalibey M, Nomme J, Cioci G, Barbe S, Chateau M, André I, Duquesne S, Marty A. 2020 An engineered PET depolymerase to break down and recycle plastic bottles. Nature. 580 (7802):216-219. (IF =42.78)*
  • Tournois M., Mathé S. André I., Esque J., Fernandez M.A. 2020 Understanding adsorption behavior of -chymotrypsin onto cation exchanger using all-atom molecular dynamics simulations. J. of chromatography A. (IF=4.169) #EAD10
  • Voss M., Xiang C., Esque J., Nobili A., Menke M.J., André I., Höhne M., Bornscheueur U.T. 2020. Creation of (R)-amine transaminase activity within an -amino acid transaminase scaffold provides insights into enzyme evolution. ACS Chemical Biology. 15:416-424 (JCR = 4.374)  DOI: 10.1021/acschembio.9b00888 **Allemagne
  • Vucinic J, Simoncini D, Ruffini M, Barbe S, Schiex T. 2020. POsitive Multistate Protein Design. Bioinformatics, 1;36(1):122-130. *
  • Wang, Z., Tauzin, A.S., Laville, E., Tedesco, P., Létisse, F., Terrapon, N., Lepercq, P., Mercade, M., and Potocki-Veronese, G. 2020. Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria. MSphere  5 (1) e00771-19; DOI: 10.1128/mSphere.00771-19.*, #plateau écologie, EAD6,
  • Wu, H., Ioannou, E., Henrissat, B., Montanier, C. Y., Bozonnet, S., O’Donohue, M. J., and Dumon, C. 2020 Investigating the multi-modularity of a GH10 Xylanase found in termite gut metagenome. Appl. Environ. Microbiol. 10.1128/AEM.01714-20 (IF 2019 = 4.597)
  • Ahmadi A, Severac E, Monties N, Claverie M, Remaud-Simeon M, Moulis C and Ligia Tiruta-Barna. 2019. An eco-design approach for an innovative production process of low molar mass dextran. Green Chem., 21, 4512. #EAD10
  • Benkoulouche M, Fauré R, Remaud-Siméon M, Moulis C, André I. 2019. Harnessing glycoenzyme engineering for synthesis of bioactive oligosaccharides. Interface focus, 9(2):20180069 (IF = 3.624)
  • Cerullo G, Varriale S, Bozonnet S, Antonopoulou I, Christakopoulos P, Rova U, Gherbovet O, Fauré R, Piechot A, Jütten P, Brás JLA, Fontes CMGA, Faraco V. 2019. Directed evolution of the type C feruloyl esterase from Fusarium oxysporum FoFaeC and molecular docking analysis of its improved variants. New Biotechnol., 51:14-20. (IF = 3.454)**
  • Charpentier A, Mignon D, Barbe S, Cortés J, Schiex T, Simonson T, Allouche D. 2019. Variable Neighborhood Search with CostFunction Networks to Solve Large Computational Protein Design Problems. J. Chem. Inf. Model., 59:127-136. (IF = 4.11)*
  • Claverie M., Cioci G., Guillonnet M., Schörghuber J., Lichtenecker R., Moulis C., Remaud-Simeon M., Lippens  G. 2019. Futile encounter engineering of the DSR-M dextransucrase modifies the resulting polymer length. Biochemistry, 58(25): 2853-2859 ** #EAD12
  • Daudé D, Vergés A, Cambon E, Emond S, Tranier S, André I, Remaud-Siméon M. 2019. Neutral genetic drift-based engineering of a sucrose-utilizing enzyme toward glycodiversification. ACS Catalysis, 9:1241-52. (IF = 11.783)*
  • Desmons S., Fauré R., Bontemps S. 2019 .Formaldehyde as a promising C1 source: the instrumental role of biocatalysis for stereocontrolled reactions. ACS Catal. 9(10):9575-9588 (IF = 12.22)*
  • Grimaud F, Pizzut-Serrin S, Tarquis L, Ladeveèze S, Morel S, Putaux JL, Potocki-Veronese G. 2019. In vitro synthesis and crystallization of b-1,4-Mannan. Biomacromolecules. 20(2):846-853. doi: 10.1021/acs.biomac.8b01457. *
  • Krebs FS, Esque J, Stote RH. A computational study of the molecular basis of antibiotic resistance in a DXR mutant. J Comput Aided Mol Des. 2019; 33:927-940. *
  • Laville E, Perrier J, Béjar N, Maresca M, Esque J, Tauzin A,  Bouhajja E, Leclerc M, Drula E, Henrissat B,  Berdah S, Di Pasquale E, Robe P, Potocki-Veronese G. 2019. Investigating host microbiota relationships through functional metagenomics. Frontiers in Microbiology, *
  • Lomthong T, Guicherd M, Cioci G, Duquesne S, Marty A, Lumyong S, Kitpreechavanich V. 2019. Poly(L-lactide)-Degrading Enzyme from Laceyella sacchari LP175: Cloning, Sequencing, Expression, Characterization and Its Hydrolysis of Poly(L-lactide) Polymer. Chiang Mai Journal of Science, 46 (3), 417-430 (IF =0.476)**.
  • Molina M, Moulis C, Monties N, Pizzut-Serin S, Guieysse D, Morel S, Cioci G, Remaud-Siméon M. 2019. Deciphering an Undecided Enzyme: Investigations of the Structural Determinants Involved in the Linkage Specificity of Alternansucrase. ACS Catalysis, 9:2222-37.
  • Montanier CY, Fanuel M, Rogniaux H, Ropartz D, Di Guilmi AM, Bouchoux A. 2019. Changing surface grafting density has an effect on the activity of immobilized xylanase towards natural polysaccharides. Sci Rep., 9(1):5763. (IF = 4.609)** # EAD7
  • Núñez-López G, Herrera-González A, Hernández L, Amaya-Delgado L, Gschaedler A, Arrizon J, Remaud-Simeon M, Morel S. 2019.  Fructosylation of phenolic compounds by levansucrase from Gluconacetobacter Diazotrophicus. Enzyme and Microbial Technology, 122: 19-25. (IF = 2.804) **
  • Ouephanit C, Boonvitthya N, Bozonnet S, Chulalaksananukul W. (2019) High-Level Heterologous Expression of Endo-1,4-β-Xylanase from Penicillium citrinum in Pichia pastoris X-33 Directed through Codon Optimization and Optimized Expression. Molecules, 24(19). (IF = 3.38)**
  • Ouephanit C, Boonvitthya N, Theerachat M, Bozonnet S, Chulalaksananukul W. (2019) Efficient expression and secretion of endo-1,4-β-xylanase from Penicillium citrinum in non-conventional yeast Yarrowia lipolytica directed by the native and the preproLIP2 signal peptides. Protein Expr. Purif., 160:1-6. (IF = 1.368)**
  • Rahuel-Clermont S, Bchini R, Barbe S, André I, Talfournier F. 2019. An active site loop acts as gatekeeper for cofactor flip in aldehyde dehydrogenase catalysis. ACS Catalysis, 9:1337-46. (IF = 11.783)*
  • Rigouin C, Lajus S, Ocando C, Borsenberger V, Nicaud JM, Marty A, Avérous L, Bordes F. 2019. Production and characterization of two medium-chain-length polydroxyalkanoates by engineered strains of Yarrowia lipolytica. Microbial Cell Factories. 18(1):99-107. (IF = 4.295)*
  • Robin J, Gueroult M, Cheikhrouhou R, Guicherd M, Borsenberger V, Marty A, Bordes F. 2019. Identification of a crucial amino acid implicated in the hydroxylation/desaturation ratio of CpFAH12 bifunctional hydroxylase. Biotechnol Bioeng. 116(10):2451-2462. (IF = 4,393)*
  • Rovira C, Alonso-Gil S, Coines J, André I. 2019. Conformational itinerary of sucrose during hydrolysis by retaining amylosucrase. Frontiers in Chemistry, DOI: 10.3389/fchem.2019.00269. (IF = 4.749)**
  • Ruffini M, Vucinic J, de Givry S, Katsirelos G, Barbe S, Schiex T. 2019. Garanties sur la diversité et la qualité des solutions des réseaux de fonctions de coût. In JFPC proceedings, Full Research paper. June 12-14, Albi, France.
  • Ruffini, M., Vucinic, J., de Givry, S., Katsirelos, G., Barbe, S. , Schiex, T. (2019). Guaranteed Diversity & Quality for the Weighted CSP. In proceedings of ICTAI 2019: The IEEE International Conference on Tools with Artificial Intelligence. Full Research paper CORE A.  Nov 4-6, Portland, Oregon
  • Simoncini D, Zhang KYJ, Schiex T, Barbe S. 2019 A Structural Homology Approach for Computational Protein Design with Flexible Backbone. Bioinformatics, 35, 2418-2426. D (IF : 8.56).
  • Tauzin A, Bruel L, Laville E, Nicoletti S, Navarro D, Henrissat B, Potocki-Veronese G, Perrier J, Giardina T, Lafond M. 2019. Sucrose 6F-phosphate phosphorylase: a novel insight in the human gut microbiome. Microbial Genomics, DOI: 10.1099/mgen.0.000253*
  • Theerachat M, Guieysse D, Morel S, Remaud-Siméon M, Chulalaksananukul W. 2019. Laccases from Marine Organisms and Their Applications in the Biodegradation of Toxic and Environmental Pollutants: a Review. Appl. Biochem. Biotech., 187(2):583-611(IF = 1.92)**
  • Abbott W, Alber O, Bayer E, Berrin JG, Boraston A, Brumer H, Brzezinski R, Clarke A, Cobucci-Ponzano B, Cockburn D, Coutinho P, Czjzek M, Dassa B, Davies GJ, Eijsink V, Eklof J, Felice A, Ficko-Blean E, Pincher G, Fontaine T, Fujimoto Z, Fujita K, Fushinobu S, Gilbert H, Gloster T, Goddard-Borger E, Greig I, Hehemann J-H, Hemsworth G, Henrissat B, Hidaka M, Hurtado-Guerrero R, Igarashi K, Ishida T, Janecek S, Jongkees S, Juge N, Kaneko S, Katayama T, Kitaoka M, Konno N, Kracher D, Kulminskaya A, van Bueren A L, Larsen S, Lee J, Linder M, LoLeggio L, Ludwig R, Luis A, Maksimainen M, Mark B, McLean R, Michel G, Montanier C, Moracci M, Mori H, Nakai H, Nerinckx W, Ohnuma T, Pickersgill R, Piens K, Pons T, Rebuffet E, Reilly P, Remaud Simeon M, Rempel B, Robinson K, Rose D, Rouvinen J, Saburi W, Sakamoto Y, Sandgren M, Shaikh F, Shoham Y, St John F, Stahlberg J, Suits M, Sulzenbacher G, Sumida T, Suzuki R, Svensson B, Taira T, Taylor E, Tonozuka T, Urbanowicz B, Vaaje-Kolstad G, Van den Ende W, Varrot A, Versluys M, Vincent F, Vocadlo D, Wakarchuk W, Wennekes T, Williams R, Williams S, Wilson D, Withers S, Yaoi K, Yip V, Zhang R. 2018. Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes. Glycobiology, 28 (1), 3-8. (IF = 3.624)
  • Ameri R, Laville E, Potocki-Véronèse G, Trabelsi S, Mezghani M, Elgharbi F,  Bejar S. 2018. Two new gene clusters involved in the degradation of plant cell wall from the fecal microbiota of Tunisian dromedary. PLoS one, 13(3): e0194621. (IF = 3.352)
  • Ben Imeddourene A, Esque J, André I. 2018. Combining multi-scale modelling methods to decipher molecular motions of a Branching Sucrase from Glycoside-Hydrolase Family 70PLoS One.13(8):e0201323. (IF = 3.352)
  • Borsenberger V, Onésime D, Lestrade D, Rigouin C, Neuvéglise C, Daboussi F, Bordes F. 2018. Multiple Parameters Drive the Efficiency of CRISPR/Cas9 Induced Gene Modifications in Yarrowia lipolytica. J. Mol. Biol., 2018. pii: S0022-2836(18)30293-6. (IF = 4.632)
  • Dagkesamanskaya A, Langer K, Tauzin A, Rouzeau C, Lestrade D, Potocki-Veronese G, Boitard L, Bibette J, Baudry J, Pompon D, Anton-Leberre V. 2018. Use of photoswitchable Fluorescent Proteins for droplet-based microfluidic screening. J. Microbiol. Methods, 147, 59-65. (IF = 1.79)
  • de Vries H, Axelos M, Sarni-Manchado P, O’Donohue M. 2018. Meeting new challenges in food science technology: the development of complex systems approach for food and biobased research. Innovative Food Science and Emerging Technologies, 46:1-6. (IF = 3.706)
  • Esque J, Sansom MSP, Baaden M, Oguey C. 2018. Analyzing protein topology based on Laguerre tessellation of a pore-traversing water network. Sci. Report, 8(1), 13540. (IF = 4.609)
  • Faucard P, Grimaud F, Lourdin D, Maigret JE, Moulis C, Remaud-Siméon M, Putaux JL, Potocki-Véronèse G, Rolland-Sabaté A. 2018. Macromolecular Structure and Film Properties of Enzymatically-Engineered High Molar Mass Dextrans. Carbohydr. Polymers, 181:337-44 (IF = 5.326)
  • Forsberg Z, Bissaro B, Gullesen J, Dalhus B, Vaaje-Kolstad G, Eijsink V. 2018. Structural determinants of bacterial lytic polysaccharide monooxygenase functionality. J. Biol. Chem., 293(4):1397-1412.  (IF = 4.253)
  • Grimaud F, Faucard P, Tarquis L, Pizzut-Serin S, Roblin P, Morel S, Le Gall S, Falourd X, Rolland-Sabaté A, Lourdin D, Moulis C, Remaud-Siméon M, Potocki-Veronese G. 2018.  Enzymatic synthesis of polysaccharide-based copolymers. Green Chem., 20: 4012-22 (IF = 8.717)
  • Grimaud F, Pizzut-Serin S, Tarquis L, Ladevèze S, Morel S, Putaux JL, Potocki-Véronèse G. 2018.  In Vitro Synthesis and Crystallization of β-1,4-Mannan. Biomacromolecules, 20:846-53. (IF = 5.941)
  • Guo Z, Robin J, Duquesne S, O’Donohue MJ, Marty A, Bordes F. 2018. Developing cellulolytic Yarrowia lipolytica as a platform for consolidated bioprocessing of cellulose to valuable products. Biotechnol. Biofuels., 11:141(IF = 6.661)
  • Guo Z, Khoomrung S, Nielsen J, Olsson L. 2018. Changes in lipid metabolism convey acid tolerance in Saccharomyces cerevisiae. Biotechnol. Biofuels., 11:297. (IF = 6.661)
  • Irague R, Topham C, Martineau N, Baylac A, Cordier H, Dressaire C, Auriol C, Maestracci M, Huet R, Walther T, François J-M, André I, Remaud-Siméon M. 2018. Conversion of an aspartate kinase into a malate kinase using a generic HTS assay for kinase screening. PLoS One, 13(2):e0193036. (IF = 3.352)
  • Jacquet M, Cioci G, Fouet G, Bally I, Thielens N, Gaboriaud C, Rossi V. 2018. C1q and Mannose-Binding Lectin Interact with CR1 in the Same Region on CCP24-25 Modules. Frontiers in Immunology, 9:453. (IF = 6.059)
  • Lazuka A, Auer L, O’Donohue M, Hernandez Raquet G. 2018. Anaerobic lignocellulolytic microbial consortium derived from termite gut: enrichment, lignocellulose degradation and community dynamics. Biotechnol. Biofuels. 11:284. (IF = 6.661)
  • Lomthong T, Chotineeranat S, Cioci G, Laville E, Duquesne S, Choowongkomon K, Marty A, Kitpreechavanich V. 2018. Molecular cloning and sequencing of raw starch degrading gene from Laceyella sacchari LP175 and its functional expression in Escherichia coli. Chiang Mai J. of Science, 45 (4): 1634-1648. (JCR = 0.535)
  • Malbert Y, Moulis C, Brison Y, Morel S, André I, Remaud-Siméon M. 2018. Engineering a branching sucrase for flavonoid glucoside diversification. Sci. report, 8:15153. (IF = 4.609)
  • Müller G, Chylenski P,  Bissaro B, Eijsink VGH, Horn SJ. 2018. The impact of hydrogen peroxide supply on LPMO activity and overall saccharification efficiency of a commercial cellulase cocktail. Biotechnol. Biofuels, 11:209. (IF = 6.661)
  • Rigouin C, Croux C, Borsenberger V, Ben Khaled M, Chardot T, Marty A, Bordes F. 2018. Increasing medium chain fatty acids production in Yarrowia lipolytica by metabolic engineering. Microbial Cell Factories. 17(1):142. (IF = 4.295)
  • Simoncini D, Zhang KYJ, Schiex T, Barbe S. 2018. A Structural Homology Approach for Computational Protein Design with Flexible Backbone. Bioinformatics, bty975. (IF = 8.561)
  • Ufarté L, Potocki-Veronese G, Cecchini D, Rizzo A, Morgavi D, Cathala B, Moreau C, Cleret M, Robe P, Klopp C, Laville E. 2018. Highly promiscuous oxidases discovered by functional exploration of the bovine rumen microbiome. Frontiers in Microbiology, 9:861. (IF = 4.557)
  • Varriale S, Cerullo G, Antonopoulou I, Christakopoulos P, Rova U, Tron T, Fauré R, Jütten P, Piechot A, Brás JLA, Fontes CMG., Faraco V. 2018. Evolution of the feruloyl esterase MtFae1a from Myceliophthora thermophila towards improved catalysts for antioxidants synthesis. Appl. Microbiol. Biotechnol., 102(12):5185-5196 (IF = 3.602)
  • Viricel C, De Givry S, Schiex T, Barbe S. 2018. Cost Function Network-based Design of Protein-Protein Interactions: predicting changes in protein binding affinity. Bioinformatics, 34:2581-2589. (IF = 8.561)
  • Vuillemin M, Grimaud F, Claverie M, Rolland-Sabaté A, Garnier C, Lucas P, Monsan P, Dols-Lafargue M, Remaud-Siméon M, Moulis C. 2018. A dextran with unique rheological properties produced by the dextransucrase from Oenococcus kitaharae DSM 17330. Carbohydr. Polym., 179:10-18. (IF = 5.326)



  • Simoncini D, Barbe S, Schiex T, Verel S. 2018. Fitness Landscape Analysis around the Optimum in Computational Protein Design. In GECCO ’18: Genetic and Evolutionary Computation Conference, July 15 – 19, 2018, Kyoto, Japan. Full Research Paper. CORE A. ACM, New York, NY, USA
  • Auer L, Mariadassou M, O’Donohue M, Klopp C, Hernandez-Raquet G. 2017. Analysis of large 16S rRNA Illumina datasets: impact of singleton read filtering on microbial community description. Molecular Ecology Resources, 17(6):e122-e132. (IF = 6.073)
  • Auer L, Lazuka A, Sillam-Dussès D, Miambi E, O’Donohue M, Hernandez-Raquet G. 2017. Uncovering the potential of termite gut microbiome for lignocellulose bioconversion in anaerobic batch bioreactors. Frontiers in Microbiology, 8:2623. (IF = 4.557)
  • Camarasa C, Chiron H, Daboussi F, Della Valle G, Dumas C, Farines V, Floury J, Gagnaire V, Gorret N, Léonil J, Mouret J-R, O’Donohue M J, Sablayroles J-M, Salmon J-M, Saulnier L, Truan G. 2017. INRA’s research in industrial biotechnology: For food, chemicals, materials and fuels. Innovative Food Science & Emerging Technologies, 46:140-152. (IF = 3.706)
  • Claverie M, Cioci G, Vuillemin M, Monties N, Roblin P, Lippens G, Remaud-Simeon M, Moulis C. 2017. Investigations on the determinants responsible for low molar mass dextran formation by DSR-M dextransucrase. ACS Catal., 7 : 7106–7119. (IF = 11.783)
  • Decout A, Silva-Gomes S, Drocourt D, Barbe S, André I, Lioux T, Pérouzel E, Vercellone A, Gilleron M, Prandi J, Tiraby G, Nigou J. 2017. Rational design of new adjuvant ligands of the C-type lectin Mincle. Proc. Natl. Acad. Sci. 114(10) : 2675-80. (IF = 10.359)
  • Gauquelin C, Baffert C, Richaud P, Kamionka E, Etienne E, Guieysse D, Girbal L, Fourmond V, André I, Guigliarelli B, Léger C, Soucaille P, Meynial-salles I. 2017. Roles of the F-domain in [FeFe] hydrogenase. BBA – Bioenergetics, 1859:69-77. (IF = 4.785)
  • Gerard D, Gueroult M, Casas-Godoy L, Condoret JS., André I, Marty A, Duquesne S. 2017. Efficient resolution of profen ethyl ester racemates by engineered Yarrowia lipolytica Lip2p lipase. Tetahedr. Asymmetry, 28:433-441 (IF = 1.858 )
  • Gerard D, Camy S, Marty A, Condoret JS. 2017. Resolution of 2-bromo-arylacetic acid ester by Yarrowia lipolytica lipase in water/supercritical CO2 two phase system. J. supercrit. fluid, 121:96-104 (IF = 3.001)
  • Guo Z, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O’Donohue MJ. 2017. Conferring cellulose-degrading ability to Yarrowia lipolytica to facilitate a consolidated bioprocessing approach. Biotechnol Biofuels, 10:132. (IF = 6.661)
  • Guo Z, Duquesne S, Bozonnet S, Nicaud JM, Marty A, O’Donohue MJ. 2017. Expressing accessory proteins in cellulolytic Yarrowia lipolytica to improve the conversion yield of recalcitrant cellulose. Biotechnol Biofuels, 10:298.(IF = 6.661)
  • Lazuka A, Roland C, Barakat A, Guillon F, O’Donohue M, Hernandez Raquet G. 2017. Ecofriendly lignocellulose pretreatment to enhance the carboxylate production of a rumen-derived microbial consortium. Bioresource Technol. 236 : 225-233. (IF = 5.978)
  • Lazuka A, Auer L, O’Donohue MJ, Hernandez-Raquet G. 2017. Efficient carboxylate production from wheat straw by a microbial consortium derived from termite Nasutitermes ephratae gut microbiome. Frontiers in Microbiology, (IF = 4.557)
  • Lomthong T, Hanphakphoom S, Kongsaeree P, Srisuk N, Guicherd M, Cioci G, Duquesne S, Marty A, Kitpreechavanich V. 2017 Enhancement of poly(L-lactide)-degrading enzyme production by Laceyella sacchari LP175 using agricultural crops as substrates and its degradation of poly(L-lactide) polymer. Polymer Degradation and Stability, 143: 64-73. (IF = 3.797)
  • Montanier C, Chabot N, Emond S, Guieysse D, Remaud-Siméon M, Peruch F, André I. 2017. Engineering of Candida antarctica lipase B for poly(ε-caprolactone) synthesis. European Polymer Journal, 95, 809-819. (IF 3.= 3.795)
  • Nouaille S, Mondeil S, Finoux AL, Moulis C, Girbal L, Cocaign-Bousquet M, 2017. The stability of an mRNA is influenced by its concentration: a potential physical mechanism to regulate gene expression. Nucleic Acids Res., 45:11711-24. (IF = 10.235)
  • Rigouin C, Gueroult M, Croux C, Dubois G, Borsenberger V, Barbe S, Marty A, Daboussi F, André I, Bordes F. 2017. Production of Medium Chain Fatty Acids by Yarrowia lipolytica: Combining Molecular Design and TALEN to Engineer the Fatty Acid Synthase. ACSSynth Biol., 6(10):1870-1879. (IF = 5.253)
  • Scillipoti J, Nioi C, Marty A, Camy S, Condoret JS. 2017. Prediction of conversion at equilibrium for lipase esterification in two-phase systems. Biochem. Eng. J. 117, Part A: 162–171. (IF = 3.106)
  • Ufarté L, Laville E, Duquesne S, Morgavi D, Robe P, Klopp C, Rizzo A, Pizzut-Serin S, Potocki-Veronese G. 2017. Discovery of carbamate degrading enzymes by functional metagenomics. PLoS One, 12(12): e0189201. (IF  = 3.352)
  • Vergés A, Cambon E, Barbe S, Moulis C, Remaud-Siméon M, André I. 2017. Isolation and characterization of an efficient mutant of Neisseria polysaccharea amylosucrase for the synthesis of controlled size maltooligosaccharides.Carbohydr. polymers,173: 403-411(IF = 5.326)
  • Vergés A, Cambon E, Barbe S, Moulis C, Remaud-Siméon M, André I. 2017. Novel product specificity toward erlose and panose exhibited by multi-site engineered mutants of amylosucrase. Protein Sci., 26 (3) : 566-577 (IF = 2.778)
  • Walther T, Topham C, Irague R, Auriol C, Baylac A, Cordier H, Dressaire C, Lozano-Huguet L, Martineau N, Stodel M, Malbert Y, Maestracci M, Huet R, André I, Remaud-Siméon M, François J-M. 2017. Construction of a synthetic methabolic pathway for biosynthesis of the non-natural methionine precursor 2,4-dihydroxybutyric acid. Nature Comm., 8:15828 (IF = 13.691)
  • Wychowski A, Bompard C, Grimaud F, Potocki-Véronèse G, D’Hulst C, Wattebled F, Roussel X. 2017. Biochemical characterization of Arabidopsis thaliana Starch Branching Enzyme 2.2 reveals an enzymatic positive cooperativity. Biochimie. 140 :146-158. (IF = 3.058)


  • Herrera-González A, Núñez-López G, Morel S, Amaya-Delgado L, Sandoval G, Gschaedler A, Remaud-Simeon M, Arrizon J. 2017. Functionalization of natural compounds by enzymatic fructosylation. Appl. Microbiol. Biotechnol., 101:5223-34. (IF = 3.602)
  • Wilkens C, Andersen S, Dumon C, Berrin J-G, Svensson B. 2017. GH62 arabinofuranosidases: Structure, function and applications. Biotechnology Advances,35, 792-804. (IF = 11.848)


Chapitres d’ouvrages

  • Wu H, Montanier CY, Dumon C. 2017. Quantifying CBM Carbohydrate Interactions Using Microscale Thermophoresis. “Protein-Carbohydrate Interactions”, Methods in Molecular Biology. Vol 1588, pp 129-141.
  • Badruna L, Burlat V, Montanier CY. 2017. CBMs as Probes to Explore Plant Cell Wall Heterogeneity Using Immunocytochemistry. Protein-Carbohydrate Interactions, Methods in Molecular Biology. Vol 1588, pp 181-197.
  • Tauzin AS., Laville E, Cecchini, D., Blottière HM, Leclerc M, Doré J, Potocki-Veronese G. 2017. Human Gut Metagenomics: Success and Limits of the Activity-Based Approaches. In Functional Metagenomics: Tools and Applications (pp. 161-178). Springer, Cham.
  • Traoré S, Allouche D, André I, Schiex T, Barbe S. 2017. Deterministic search methods for Computational Protein Design. Computational Protein Design book, series Methods in Molecular Biology, Humana Press – Springer.  ISBN 978-1-4939-6637-0
  • Andberg M, Aro-Karkkainen N, Carlson P, Oja M, Bozonnet S, Toivari M, Hakulinen N, O’Donohue M, Penttila M, Koivula A. 2016. Characterization and mutagenesis of two novel iron-sulphur cluster pentonate dehydratases. Applied Microbiology and Biotechnology, 100 (17): 7549-7563. (IF = 3.716)
  • Abot A, Arnal G, Auer L, Lazuka A, Labourdette D, Lamarre S, Trouilh L, Laville E, Lombard V, Potocki-Veronese G, Henrissat B, O’Donohue M, Hernandez-Raquet G, Dumon C Anton Leberre V. 2016. CAZyChip: dynamic assessment of exploration of glycoside hydrolases in microbial ecosystems. BMC Genomics, 17:671. (IF = 4.284)
  • Bouraoui H, Desrousseaux M-L, Ioannou E, Alvira P, Manaï M, Rémond C, Dumon C, Fernandez-Fuentes N, O’Donohue M. 2016. The GH51 α-l-arabinofuranosidase from Paenibacillus sp. THS1 is multifunctional, hydrolyzing main-chain and side-chain glycosidic bonds in heteroxylans. Biotechnol. for Biofuels , 9 (1) : 1-14. (IF = 6.732)
  • Brison Y, Malbert Y, Czaplicki G, Mourey L, Remaud-Simeon M, Tranier S. 2016. Structural Insights into the Carbohydrate Binding Ability of an α-(1→ 2) Branching Sucrase from Glycoside Hydrolase Family 70. J. Biol. Chem., 291 (14): 7527-40. (IF = 4.323)
  • Culbertson AT, Chou Y-H, Smith AL, Young ZT, Tietze AA, Cottaz S, Fauré R, Zabotina O.A. 2016. Enzymatic activity of arabidopsis xyloglucan xylosyltransferase 5. Plant Physiol. 171:1893-1904 (IF = 7.428)
  • Durand J, Biarnés X, Watterlot L, Bonzom C, Borsenberger V, Planas A, Bozonnet S, O’Donohue MJ, Fauré R. 2016. A single point mutation alters the transglycosylation/hydrolysis partition, significantly enhancing the synthetic capability of an endo-glycoceramidase. ACS Catal., 6(12): 8264-8275 (IF = 10.945)
  • Gherbovet O, Fauré R, Ferreira F, Durand J, Ragon M, Hostyn G, Record E, Bozonnet S, O’Donohue MJ. 2016. Design of chromogenic probes for efficient screening and evaluation of feruloyl esterase-like activities. J Mol. Catal. B: Enzym. 126:24-31 (IF = 2.328)
  • Hoarau M, Malbert Y, Irague R, Hureau C, Faller P, Gras E, André I, Remaud-Siméon M. 2016. A robust and efficient production and purification procedure of recombinant Alzheimer’s disease amyloid-b peptides. PLoS One, 11(8): e0161209. (IF = 3.394)
  • Koffi GY, M Remaud-Simeon M, AE Due AE, D Combes D. 2016. Isolation and chemoenzymatic treatment of glycoalkaloids from green, sprouting and rotting Solanum tuberosum potatoes for solanidine recovery. Food Chem., 220:257-265. (IF = 4.498)
  • Maktouf S, Jeddou KB, Moulis C, Hajji H, Remaud-Simeon M, Ellouz-Ghorbel R . 2016. Evaluation of dough rheological properties and bread texture of pearl millet-wheat flour mix. Journal of Food Science and Technology, 1-6. (IF = 1.597)
  • Moreau C, Cioci G, Iannello M, Laffly E, Chouquet A, Ferreira A, Thielens NM, Gaboriaud C. 2016. Structures of parasite calreticulins provide insights into their flexibility and dual carbohydrate/peptide-binding properties. IUCrJ, 3(Pt 6):408-419. (IF = 5. 819)
  • Tauzin AS, Laville E, Xiao Y, Nouaille S, Le Bourgeois P, Heux S, Portais JC, Monsan P, Martens EC, Potocki-Veronese G, Bordes F. 2016. Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to E. coli. Mol. Microbiol., 102(4): 579-592 (IF = 4.135)
  • Topham CM, Barbe S, André I. 2016. An Atomistic Statistical Effective Energy Function for Computational Protein Design. J. Chem. Theory Comput., 12(8):4146-68, 2016. (IF = 6.016)
  • Traoré S, Roberts KE, Allouche D, Donald BR, André I, Schiex T, Barbe S. 2016. Fast search algorithms for Computational Protein Design. J. Comp. Chem., 12:1048-58.  (IF = 4.602)
  • Vuillemin M, Claverie M, Brison Y, Séverac E, Bondy P, Morel S, Monsan P, Moulis C, Remaud-Siméon M. 2016. Characterization of the first α-(1→ 3) branching sucrases of GH70 family. J Biol Chem., 291(14):7687-702 (IF = 4.323)
  • Wongwatanapaiboon J, Malilas W, Ruangchainikom C, Thummadetsak G, Chulalaksananukul S, Marty A, Chulalaksananukul W. 2016. Overexpression of Fusarium solani lipase in Pichia pastoris and its application in lipid degradation. Biotechnology and Biotechnical Equipment, 30 (5): 885-893 (IF = 0.699)
  • Wongwatanapaiboon ., Klinbunga S, Ruangchainikom C, Thummadetsak G, Chulalaksananukul S, Marty A, Chulalaksananukul W. 2016. Cloning, expression, and characterization of Aureobasidium melanogenum lipase in Pichia pastoris. Biosci., Biotechnol. and Biochem., 80 (11): 2231-2240 (IF = 1.063)


  • Ladevèze S, Laville E, Despres J, Mosoni P, Potocki-Véronèse G. 2016. Mannoside recognition and degradation by bacteria. Biological Reviews,92(4):1969-90. (IF = 11.740)
  • Moulis C, André I, Remaud-Siméon M. 2016. GH13 amylosucrases and GH70 branching sucrases, atypical enzymes in their respective families. Cellular and Molecular Life Sciences, 73 (14):2661-2679. (IF = 5.643)


  • Viricel C, Simoncini D, Barbe S, Schiex T. 2016. Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure. In Principles and Practice of Constraint Programming: 22nd International Conference CP 2016 Full Research Paper. Springer International Publishing.
  • Amari M, Gabriel V, Robert R, Morel S, Moulis C, Gabriel B, Remaud-Siméon M, Fontagné-Faucher C. 2015. Overview of the glucansucrase equipment of Leuconostoc citreum LBAE-E16 and LBAE-C11, two strains isolated from sourdough. FEMS microbiology letters, 362 (1): 1-8.   (IF = 2.056)
  • Arab-Jaziri F, Bissaro B, Tellier C, Dion M, Fauré R, O’Donohue MJ. 2015. Enhancing the chemoenzymatic synthesis of arabinosylated xylo-oligosaccharides by GH51 α-l-arabinofuranosidase. Carbohydr. Res., 401:64-72 (IF = 2.023)
  • Arnal G, Bastien G, Monties N, Abot A, Leberre VA, Bozonnet S, O’Donohue M, Dumon C. 2015. Investigating the Function of an Arabinan Utilization Locus Isolated from a Termite Gut Community. Appl. Environ. Microbiol., 81:31–39. (IF = 4.303)
  • Bissaro B, Durand J, Biarnés X, Planas A, Monsan P, O’Donohue MJ, Fauré R. 2015. Molecular design of non-Leloir furanose-transferring enzymes from an α-l-arabinofuranosidase: a rationale for the engineering of evolved transglycosylases. ACS Catal., 5(8): 4598-4611 (IF = 9.874)
  • Brissonnet Y, Ladevèze S, Tezé D, Fabre E, Deniaud D, Daligault F, Tellier C, Sesták S, Remaud-Simeon M, Potocki-Veronese G, Gouin SG. 2015. Polymeric iminosugars improve the activity of carbohydrate-processing enzymes. Bioconjugate chemistry26(4): 766-772 (IF = 4.558)
  • Cecchini DA, Fauré R, Laville E, Potocki-Véronèse G. 2015. Biochemical identification of the catalytic residues of a glycoside hydrolase family 120 β-xylosidase, involved in xylooligosaccharide metabolisation by gut bacteria. FEBS Lett., 589:3098-3106. (IF = 3.478)
  • Cuskin F, Davies G, Baslé A, Ladevèze S, Potocki-Véronèse G, Gilbert H, Lowe L. 2015. The GH130 family of mannosidase phosphorylases contains glycoside hydrolases. J. Biol. Chem., 290(41): 25023-25033. (IF = 4.403)
  • Guo Z, Duquesne S, Bozonnet S, Cioci G, Nicaud JM, Marty A, O’Donohue MJ. 2015. Development of cellobiose-degrading ability in Yarrowia lipolytica strain by overexpression of endogenous genes. Biotechnol. Biofuels, 8:109 (IF = 7.398)
  • Houser J, Komarek J, Cioci G, Varrot A, Imberty A, Wimmerova M. Structural insights into Aspergillus fumigatus lectin specificity: AFL binding sites are functionally non-equivalent. Acta Crystallogr. D., 71(Pt 3):442-53. (IF = 8.751)
  • Ladevèze S, Cioci G, Roblin P, Mourey L, Tranier S, Potocki-Veronese G. 2015. Structural bases for N-glycan processing by mannoside phosphorylase. Acta Cryst. D, 71:1335–1346. (IF = 8.751)
  • Lazuka A, Auer L, Bozonnet S, Morgavi DP, O’Donohue MJ, Hernandez-Raquet G. 2015. Efficient anaerobic transformation of raw wheat straw by a robust cow rumen-derived microbial consortium. Bioresource Technology, 196 : 241-249. (IF = 5.744)
  • Maktouf S, Moulis C, Miled N, Chaabouni SE, Remaud-Simeon ., 2015. A highly thermostable lichenase from Bacillus sp UEB-S: Biochemical and molecular characterization, J.Mol. Cat. B: Enzymatic. 115:8-12 (IF = 2.352)
  • Martinez T, Texier H, Nahoum V, Lafitte C, Cioci G, Heux L, Dumas B, O’Donohue M, Gaulin E, Dumon C. 2015. Probing the Functions of Carbohydrate Binding Modules in the CBEL Protein from the Oomycete Phytophthora parasitica. PLoS One, 10(9):e0137481.(IF = 3.535)
  • Meunchan M, Michely S, Devillers H, Nicaud JM, Marty A, Neuvéglise C. Comprehensive Analysis of a Yeast Lipase Family in the Yarrowia Clade. PLoS One. 10(11):e0143096. (IF = 3.535)
  • Nioi C, Riboul D, Destrac P, Marty A, Marchal L, Condoret JS. 2015. The centrifugal partition reactor, a novel intensified continuous reactor for liquid–liquid enzymatic reactions. Biochem. Eng. J., 103 : 227-233 (IF = 2.859)
  • Passerini D, Vuillemin M, Ufarté L, Morel S, Loux V, Fontagné-Faucher C, Monsan P, Remaud-Siméon M, Moulis C. 2015. Inventory of the GH70 enzymes encoded by Leuconostoc citreum NRRL B-1299 – identification of three novel α-transglucosylases. FEBS J., 282(11): 2115-30. (IF = 4.082)
  • Salamone S, Guerreiro C, Cambon E, André I, Remaud-Siméon M, Mulard LA. 2015. Programmed chemo-enzymatic synthesis of the oligosaccharide component of a carbohydrate-based antibacterial vaccine candidate. Chem. Comm. 51:2581-2584. (IF = 6.628)
  • Salamone S, Guerreiro C, Cambon E, Hargreaves JM, Tarrat N, Remaud-Siméon M, André I, Mulard L. 2015. Chemo-enzymatic synthesis of Shigella flexneri–specific oligosaccharides using disaccharides as transglucosylase acceptor substrates, J. Org. Chem., 80(22):11237-57. (IF = 4.538)
  • Simoncini D, Allouche D, de Givry S, Delmas C, Barbe S, Schiex T. Guaranteed Discrete Energy Optimization on Large Protein Design Problems. 2015. J. Chem. Theory Comput., 11(12):5980-9.  (IF = 5.756)
  • Verges A, Cambon E, Barbe S, Salamone S, Le GuenY,Moulis C, Mulard LA, Remaud-Siméon M., André I. 2015. Computer-aided engineering of a transglucosylase for the glucosylation of an unnatural disaccharide of relevance for bacterial antigen synthesisACS Catalysis, 5(2): 1186-1198 (IF = 9.874)
  • Vidal-Melgosa S, Pedersen HL, Schückel J, Arnal G, Dumon C, Amby DB, Monrad RN, Westereng B, Willats W G T. 2015. A new versatile microarray-based method for high throughput screening of carbohydrate-active enzymes. J. Biol. Chem., 290: 9020–9036* (IF = 4.403)


  • Bissaro B, Monsan P, Fauré R, O’Donohue MJ. 2015. Glycosynthesis in a Waterworld: new insight into the molecular basis of transglycosylation in retaining glycoside hydrolases. Biochem. J., 467(1):17-35. (IF = 4.116)
  • Heux S, Meynial-Salles I, O’Donohue MJ, Dumon C. 2015. White biotechnology: state of the art strategies for the development of biocatalysts for biorefining. Biotechnology Advances, 33(8):1653-70.(IF = 11.847)
  • Larraufie P, de Wouters T,  Potocki-Veronese G, Blottière HM, Doré J. 2015. Functional metagenomics to decipher food-microbe-host crosstalk. Proceedings of the Nutrition Society, 74(1):1-4. (IF = 4.625)
  • Ufarté L, Potocki-Véronèse G, Laville E. 2015. Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology. Frontiers in Microbiology, 6:563. (IF = 4.360)
  • Ufarté L, Duquesne S, Laville E, Potocki-Veronese G. 2015. Metagenomics for the discovery of pollutant degrading enzymes. Biotechnology Advances,33(8): 1845-1854. (IF = 11.847)


  • Viricel C, Simoncini D, Allouche D, De Givry S, Barbe S, Schiex T. 2015. Approximate counting with deterministic guarantees for affinity computation . In: Modelling, Computation and Optimization in Information Systems and Management Sciences (p. 165-176). Advances in Intelligent Systems and Computing, 360 (1ère édition). Full Research Paper Proceedings of the 3rd International Conference on MCO- 2015, Metz, FRA (2015-05-11 – 2015-05-13). CHE : Springer International Publishing.


Chapitres d’ouvrages

  • Laville E, Ufarté L, Potocki-Veronese G. 2015. Découverte de nouvelles fonctions et familles protéiques : nouveaux défis pour les biotechnologies et l’écologie microbienne. In ‘La métagénomique : développements actuels et futures perspectives’. Ed. QUAE, collection Savoir Faire.35-49
  • Lourdin D, Putaux JL, Potocki-Veronese G, Chevigny C,  Rolland-Sabaté A, Buléon A. 2015. Crystalline structure in starch. In Starch – Springer. Ed. Y. Nakamura. 61-90.
  • Ufarté L, Bozonnet S, Laville E, Cecchini DA, Pizzut-Serin S, Jacquiod S, Demanèche S,  Simonet P, Franqueville L, Potocki-Veronese G. 2015. Functional metagenomics: construction and high-throughput screening of fosmid libraries for discovery of novel carbohydrate-active enzymes.  In Microbial Environmental Genomics (Methods in Molecular Biology) – Springer Series. Ed. F.M. Martin and S. Uroz. Methods Mol Biol. 2016;1399:257-71.
  • Allouche D, André I, Barbe S, Davies J, de Givry S, Katsirelos G, O’Sullivan B, Prestwitch S, Schiex T, Traoré S. 2014. Computational Protein Design as an optimization Problem. Artif. Intell., 212:59-79. (IF = 3.726)
  • Beopoulos A, Verbeke J, Bordes F, Guicherd M, Bressy M, Marty A, Nicaud JM. 2014. Metabolic engineering for ricinoleic acid production in the oleaginous yeast Yarrowia lipolytica. Applied Microbiol. Biotechnol. 98(1):251-62. (IF = 3.848)
  • Berland M, Offmann B, André I, Remaud-Siméon M, Charton P. 2014. A web-based tool for rational screening of mutants libraries using ProSAR. Protein Engineering Design and Selection, 27:375-381. (IF = 2.604)
  • Bissaro B, Saurel O, Arab-Jaziri F, Saulnier L, Milon A, Tenkanen M, Monsan P, O’Donohue MJ, Fauré R. 2014. Mutation of a pH-modulating residue in a GH51 a-l-arabinofuranosidase leads to a severe reduction of the secondary hydrolysis of transfuranosylation products. BBA-Gen. Subjects, 1840(1):626-636. (IF = 3.848)
  • Borsenberger V, Dornez E, Desrousseaux M-L, Massou S, Tenkanen M, Courtin CM, Dumon C, O’Donohue MJ, Fauré R. 2014. A (1)H NMR study of the specificity of α-L-arabinofuranosidases on natural and unnatural substrates. Biochim. Biophys. Acta, 1840(10): 3106–3114. (IF = 4.555)
  • Cambon E, Barbe S, Pizzut-Serin S, Remaud-Simeon M, André I. 2014. Essential role of amino acid position 226 in oligosaccharide elongation by amylosucrase from Neisseria polysaccharea. Biotechnol. Bioeng.,111:1719-1728. (IF = 4.289)
  • Casas Godoy L, Meunchan M,  Cot M, Duquesne S, Bordes F, Marty A. 2014. Yarrowia lipolytica Lipase Lip2: an efficient enzyme for the production of Docosahexaenoic Acid Ethyl Esters Concentrates. J. Biotechnol., 180:30-36.  (IF = 3.180)
  • Dimopoulou M, Vuillemin M, Campbell-Sills H, Lucas P, Ballestra P, Miot-Sertier C, Favier M, Coulon J, Moine V, Doco T, Roques M, Williams P, Petrel M, Gontier E, Moulis C, Remaud-Simeon M, Dols-Lafargue M. 2014. Exopolysaccharide (EPS) Synthesis by Oenococcus oeni: From Genes to Phenotypes. PloS One, 9(6) : e98898. (IF = 3.702)
  • Duquesne S, Bozonnet S, Bordes F, Dumon C, Nicaud JM, Marty A. 2014. Construction of a highly active xylanase displaying oleaginous yeast: Comparison of anchoring systems. PLoS One, 9(4):e95128.  (IF = 3.702)
  • Malbert Y, Pizzut-Serin S, Massou S, Cambon E, Laguerre S, Monsan P, Lefoulon F, Morel S, André I, Remaud-Simeon M. 2014. Extending the structural diversity of a-flavonoïd glycosides with engineered glucansucrases. ChemCatChem., 6(8):2282-2291. (IF = 5.213)
  • Nars GSaurel OBordes F, Saves I, Remaud-Simeon M, André I, Milon A, Marty A. 2014. Production of stable isotope labelled lipase Lip2 from Yarrowia lipolytica for NMR studies. Protein Expr. Purif., 101:14-20. (IF = 1.617)
  • Passerini D., Vuillemin M., Laguerre S., Amari M., Loux V., Gabriel V., Robert H., Morel S., Monsan P., Gabriel B., Fontagné-Faucher C, Remaud-Siméon M, Moulis C. 2014. Genome Announc., 26 :2(6) :e01179-14
  • Rolland-Sabaté A, Guilois S, Grimaud F, Lancelon-Pin C, Roussel X, Vilso-Nielsen A, Putaux JL, Dhulst C, Potocki-Veronese G, Buleon A. 2014. Characterization of hyperbranched glycopolymers produced in vitro using enzymes. Anal. Bioanal. Chem., 406:1607-1618. (IF = 3.565)
  • Siguier B, Haon M, Nahoum V, Marcellin M, Burlet-Schiltz O, Coutinho PM, Henrissat B, Mourey L, Donohue MJ, Berrin JG, Tranier S, Dumon C. 2014. First structural insights into α-l-arabinofuranosidases from the two GH62 glycoside hydrolase subfamilies. J. Biol. Chem., 289(8):5261-5273. (IF = 4.693)
  • Song L, Dumon C, Siguier B, André I, Eneyskaya EV, Kulminskaya A, Bozonnet S, O’Donohue MJ. 2014. Impact of an N-terminal extension on the stability and activity of the GH11 xylanase from Thermobacillus xylanilyticus. J. Biotechnol., 174:64-72. (IF = 3.180)
  • Vuillemin M, Malbert Y, Laguerre S, Remaud-Simeon M, Moulis C. 2014. Optimizing the production of an a-(1→2) branching sucrase in Escherichia coli using statistical design. Appl Microbiol Biotechnol., 98:5173-5184 . (IF = 3.848)


  • André I, Potocki-Véronèse G, Barbe S, Moulis C, Remaud-Simeon M. 2014. CAZyme discovery and design for sweet dreams. Curr. Opin. Chem. Biol., 19:17-24. (IF = 8.189)
  • Wijffels R, Sanders J, van Boxtel T, O’Donohue M. 2014. Biorefineries for food, fuels and materials. Biofuels, Bioproducts and Biorefining, 8 (4) :453 – 455. (IF = 5.482)


Chapitres d’ouvrages

  • Arrizon J., Urias-Silvas J E., Sandoval G., Mancilla-Margalli N J., Gschaedler A., Morel S., Monsan P., 2014. Production and bioactivity of Fructan-Type Oligosaccharides. Food Oligosaccharides: Production, Analysis and Bioactivity. 184-196. Ed John Wiley & Sons.
  • Daudé D, André I, Monsan P, Remaud-Simeon M. 2014. Successes in engineering glucansucrases to enhance glycodiversification. Royal Society of Chemistry book series, Carbohydr. Chem., 40, 624–645
  • Amari. M, Gomez Arango. L F, Gabriel. V, Robert. H, C, Morel. S, Moulis. C, Gabriel. B, Remaud-Siméon. M, Fontagné-Faucher. C. 2013. Characterization of a novel dextransucrase from Weissella confuse isolated from sourdough. Appl Microbiol Biot. 97 (12) : 5413-5422 (JCR = 3.689)
  •  Arab-Jaziri F., Bissaro B., Dion M., Saurel O., Harrison D., Ferreira F., Milon A., Tellier C., Fauré R., O’Donohue M.J. (2013) Engineering transglycosidase activity into a GH51 α-l-arabinofuranosidase. New Biotechnol. 30(5), 536-544 (JCR = 2.756)
  •  Bastien G, Arnal G, Bozonnet S, Laguerre S, Ferreira F, Fauré R, Henrissat H, Lefèvre F, Robe P, Bouchez O, Noirot C, Dumon C, O’Donohue M. Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics. Biotechnology for Biofuels, 2013, 6:78 (JCR 6.088).
  •  Bejar. W,  Gabriel. V, Amari. M, Morel. S, Mezghani. M, Maguin. E,  Fontagné-Faucher. C, Bejar. S, Chouayekh. Characterization of glucansucrase and dextran from Weissella sp. TN610 with potential as safe food additives. H. Int J Biol Macromo, 2013, 52, 125-132 (JCR = 1.867)
  •  Boonvitthya, N., Burapatana, V.,  Bozonnet, S., O’Donohue,  M.  J. and Chulalaksananukul, W. (2013) Comparison of the heterologous expression of Trichoderma reesei endoglucanase II and cellobiohydrolase II in the yeasts Pichia pastoris and Yarrowia lipolytica. MolBiotechnol. Jun;54(2):158-69. (IF = 2.171).
  •  Borsenberger V., Dornez E., Desrousseaux M.-L., Courtin C.M., O’Donohue M.J., Fauré R. (2013) A substrate for the detection of broad specificity α-l-arabinofuranosidases with indirect release of a chromogenic group. Tetrahedron Lett. 2013, 54(24), 3063-3066 (JRC = 2.683)
  •  Bouraoui H, Rebib H, Ben Aissa M, Touzel JP, O’donohue M, Manai M. (2013) Paenibacillus marinum sp. nov., a thermophilic xylanolytic bacterium isolated from a marine hot spring in Tunisia. J. Basic Microb. 53(11):877-883. (JRC = 1.198)
  •  Brison Y, Laguerre S, Lefoulon F, Morel S, Monties N, Potocki-Veronèse G, Monsan P, Remaud-simeon M. Branching pattern of gluco-oligosaccharides and 1.5 kDa dextran grafted by the a-1,2 branching sucrase GBD-CD2. 2013. DOI Carbohydr Polym (JCR = 3.628)
  •  Casas-Godoy L., Marty A., Sandoval G., Ferreira-Dias S. (2013) Optimization of medium chain length fatty acid incorporation into olive oil catalyzed by immobilized Lip2 from Yarrowia lipolytica, Biochemical Engineering Journal 77 (2013) 20– 27 (IF 2,98)
  •  Cecchini D., E. Laville, S. Laguerre, P. Robe, M. Leclerc, J. Doré, B. Henrissat, M.Remaud-Simeon, P. Monsan and G. Potocki-Veronese. 2013. Functional metagenomics reveals novel pathways of prebiotic metabolisation by human gut bacteria. PLOS One 8(9): e72766. doi:10.1371/journal.pone.0072766 (IF = 4.09)
  •  Couturier M, Féliu J, Bozonnet S, Roussel A, Berrin JG. Molecular engineering of fungal GH5 and GH26 beta-(1,4)-mannanases toward improvement of enzyme activity. PLOS One. 2013 Nov 22;8(11) e79800. doi:10.1371/journal.pone.0079800. (IF = 4.09)
  • Daudé D., Champion E., Morel S., Guieysse D., Remaud-Siméon M. and André I. 2013. Probing substrate promiscuity of amylosucrase from Neisseria polysaccharea. ChemCatChem. 8, 2288-2295. (JCR = 5.18)
  • Daudé D. Topham C., Remaud-Siméon M., and André I. 2013. Probing impact of active site residue mutations on stability and activity of Neisseria polysaccharea amylosucrase. Protein Sci. 22, 1754-1765 (JCR = 2.73)
  • Elgue S., Conté A., Condoret J.S., Marty A. 2013 Continuous lipase esterification using Process Intensification technologies.  Journal of Chemical Technology & Biotechnology. DOI 10.1002/jctb.4247 (JCR = 2.5)
  • Elgue S., Conté A, Marty A. and Condoret J.S. (2013) Two-phase enzymatic reaction using Process Intensification technologies. Chemistry today vol. 31(6) (JCR 0.54).
  • Grimaud F., Lancelon-Pin C., Rolland-Sabaté A., Roussel X., Laguerre S., Viksø-Nielsen A., Putaux JL., Guilois S., Buléon A., D’Hulst C., Potocki-Véronèse G. In vitro synthesis of hyperbranched alpha-glucans using a biomimetic enzymatic toolbox, Biomacromolecules 2013 Feb 11;14(2):438-47. (JCR = 5.479)
  • Irague, R., Tarquis L., André I., Moulis C., Morel S. , Monsan P., Potocki-Veronese G. and Remaud-Simeon M. 2013. Combinatorial engineering of dextransucrase specificity. PLOS One 8(10): e77837. doi:10.1371/journal.pone.0077837 (IF = 4.09)
  • Ladevèze S. , Tarquis L., Cecchini D.A., Bercovici J., André I., Topham C.M., Morel S., Laville E.,  Monsan P., Lombard V., Henrissat B., and Potocki-Véronèse G. 2013. Role of glycoside-phopshorylases in mannose foraging by human gut bacteria. J. Biol. Chem., 288:32370-32383. (IF 5.33)
  • Maktouf S, Moulis C, Kamoun A, Chaari F, Chaabouni SE, Remaud-Simeon M., A laundry detergent compatible lichenase: Statistical optimization for production under solid state fermentation on crude millet. 2013. Industrial Crops and Products 43, 349-354 (JCR 2.87)
  • Maktouf S, Kamoun A, Moulis C, Remaud-Simeon M, Ghribi D, Chaabouni SE. (2013). A new raw-starch-digesting a-amylase: production under solid-state fermentation on crude millet and biochemical characterization. J Microbiol Biotechnol. 2013 Apr;23(4):489-98.
  • Marris, C.; Heams, T.; Kepes, F.; Campos, L.; Monsan, P.; Toussaint, J. F.; Benoit-Browaeys, D.; Haiech, J.; Alix, J. P.; Fellous, M.Marris et al. (2013) Measuring an Open and Responsible Culture Discussion. MS-Medicine Sciences.
  • Monsan P. (2013) Characterization of the scientific dynamic of synthetic biology Introduction. MS-Medicine Sciences.
  • Monsan P. (2013) Les biotechnologies blanches : révolution… ou évolution ? L’Actualité Chimique, juin-juillet-août 2013, N° 375-376, 17-23.
  • Monsan, P.; Bayer, T.; Alix, J. P.; Marris, C.; Aguiton, S.; de Brem, P.; la Salle, D.; Cerisy, T.; Margerit, S. (2013) Analysing the Contributions of Social Sciences Discussion. MS-Medicine Sciences.
  • Monsan, P. Lepargneur J.P. (2013) Les prébiotiques. In « Actualités permanentes en microbiologie clinique », Section III, Chapitre 17, Editions Eska, Paris.
  • Park, J. M.; Kondo, A.; Chang, J. S.; Chou, C. P.; Monsan, P. (2013) Biorefineries. Bioresource Technology.
  • Rivera I., Mateos J.C., Marty A., Sandoval G., Duquesne S. 2013. Lipase from Carica papaya latex presents high enantioselectivity towards the resolution of prodrug 2-bromo-phenylacetic acid octyl ester. Tetrahedron Letters; 54, 5523-5526. (JCR = 2.683)
  • Roblin P., Potocki-Veronese G., Guieysse D., Guérin F., Axelos M., J. Perez,  Buleon A.(2012), SAXS conformational tracking of amylose synthesized by amylosucrases. Biomacromolecules. 2013 Jan 14;14(1):232-9. (JCR = 5.478)
  • Roussel X., Lancelon-Pin C., Viksø-Nielsen A.,  Rolland-Sabaté A.,  Grimaud F.,  Potocki-Véronèse G., Buléon A.,  Putaux JL., D’Hulst C.,  Characterization of substrate and product specificity of the purified recombinant glycogen Branching Enzyme of Rhodothermus obamensis, Biochim Biophys Acta. 2013 Jan;1830(1):2167-77. (JCR = 5.0)
  • Skov LK, Pizzut-Serin S, Remaud-Simeon M, Ernst HA, Gajhede M, Mirza O. The structure of amylosucrase from Deinococcusradiodurans has an unusual open active-site topology. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 . 69(9):973-8.
  • Topham C., Rouquier M., Tarrat N. and André I. 2013. Adaptive Smith-Waterman Residue Match Seeding for Protein Structural Alignment. Proteins : Structure, Function, and Bioinformatics. 81(10), 1823-1839 (JCR = 3.33)
  • Traoré S., Allouche D., André I., de Givry S., Katsirelos G., Schiex T. and Barbe S. 2013.  A New Framework for Computational Protein Design through Cost Function Network Optimization. Bioinformatics. 29(17), 2129-2136 (JCR = 5.32)
  • Zhang H., Fauré R., François J.-M., Blanc P.J., de Billerbeck G.M. (2013) Xylosylation as an effective means for reducing yeast growth inhibition by 2-phenylethanol. J. Basic Microb. 53(9), 792-795 (JRC = 1.266)


  • Lanos, P.; Ramette, M.; Remaud-Simeon, M.; Moulis, C.; Pizzut-Serin, S.; Severac, E. Procédé D’obtention De Fibres Solubles Par Voie Enzymatique. WO2023026010A1, March 2, 2023.
  • Lanos, P.; Ramette, M.; Remaud-Simeon, M.; Moulis, C.; Pizzut-Serin, S.; Severac, E. Procédé D’obtention De Fibres Solubles Par Voie Enzymatique, demande FR2207071 déposé le 11/07/2022
  • Chen X., Sharma D., André I., Esque J., Xue, Bo, Shan Y.W., Remaud-Siméon M., Bozonnet S. Singapore Patent Application No. 10202260151P filed on November 21, 2022
  • Fernandes S., Moulis C., Bascans E., Claverie M., Severac E., Remaud-Siméon M. Mycosporines glucosylees par voie enzymatique pour le développement de produits anti-uv innovants. Demande de brevet déposée le 04/08/2022 par UPPA, CNRS, INRAE, INSA ayant le n°2208098.
  • Komorowski V., Pintori D., Faure C., Leal Calderon F., Severac E., Guieysse D., Moulis C., Remaud-Simeon M. PROCEDE DE PREPARATION DE GLYCOLIPIDES, GLYCOLIPIDES ET LEURS UTILISATIONS   Demande de brevet français n° 2204730 déposée le 18 mai 2022 (Univ Bordeaux, IP Bordeaux, INRAE, CNRS, INSA)
  • Lajus S., Flores-Flores R., Lestrade D., Deroite A., Dagkesamanskaya, Potocki-Veronese G. A new droplet micro-to-milli-fluidics-based process to screen for phenotypes or biological processes. Brevet européen déposé par INRAE le 20/05/2022 sous le N°EP22305758.9
  • Lajus, Lestrade D., Deroite A., Dagkesamanskaya, Potocki-Veronese G. new milli-to-microfluidics-based process to screen microbial growth in droplets. Brevet européen déposé par INRAE le 20/05/2022 sous le N° EP22305759.7
  • Severac E., Guieysse D., Remaud-Simeon M. Moulis C., Pintori D., Zhendre Komoroski V., Faure K., Calderoni F. Procédé de préparation de glycolipides, glycolipides et leur utilisation. Demande de brevet français déposée le 18 mai 2022 sous le n° 2204730.

Maccow A., Guieysse D., Boissonnat G., Remaud-Simeon M. Process for dyeing a cellulosic material. Demande de brevet déposée par PILI. EP21306891, 21 décembre 2021


Chen X., Zhang C., T R., Shukal S., Smith D., André I., Esque J. Total enzymatic synthesis of cis-α-irone from renewable carbon source, Provisional patent n° 10202104047X  filed, April 20, 2021


Durand J., Létisse F., Tedesco P., Potocki-Veronese G.. Souche et procédé de production d’oligosaccharides, Brevet déposé par Toulouse Tech Transfert sous le N° PCT/FR2021/050827.

Bouchiba Y., Barbe S., Duquesne S., André I.  (2020); Novel proteases and uses thereof.

Déposé le 30/12/2020 au nom de CARBIOS. Publication attendue pour mai 2022.


Severac E., Guieysse D., Morel S., Moulis C., Remaud-Simeon M. Procédé de préparation de polyglucosides d’alkyle et polyglucosides d’alkyles obtenus selon le procédé. Demande de Brevet français déposée le 2 juillet 2020 sous le n°FR2007021.

Duquesne S., Gavalda S., Ben Khaled M. (2019); Novel proteases and uses thereof.

Déposé le 18/11/2019 et le 16/12/2019 au nom de CARBIOS. Publication attendue pour avril 2021.

3 dépôts Novel esterases and uses thereof. Déposés le 27/07/2018 au nom de CARBIOS. Publication attendue pour janvier 2020.

  • André I., Brison Y., Cambon E., Malbert Y., Urban P., Pompon D., Remaud-Simeon M., Morel S. (2017) Nouveaux- flavonoïdes O-α-glucosylés sur le cycle B, procédés d’obtention et utilisations US2017107242 (A1) déposé le 20/04/2017.
  • Guicherd M., Vuillemin M., Benkhaled M., Duquesne S., Marty A. + CARBIOS – Novel proteases and uses thereof. PCT 1er dépôt décembre 2016 déposé décembre 2017
  • Guicherd M., Duquesne S., Marty A., André I., Gueroult M. + CARBIOS – Novel proteases and uses thereof. Déposée décembre 2017
  • Mulard L., Le heiget G., Hu Z., Barel L-A., André I., Moulis A., Remaud-Siméon M., Barbe S., Benkoulouche M., Ben Imeddourene A. (2017) Protected tetrasaccharides, their process of preparation and their use in the synthesis of bacterial oligosaccharides. US 62/528,277, filed July 3, 2017
  • Rigouin C., Guéroult M., Percheron B.,  Croux C., Barbe S., Daboussi F., André I., Bordes F., Marty A., – Mutant yeast strain capable of producing medium chain fatty acids. Déposé le 13/01/2017  EP17305044
  • Senez V., Vlandas A., Lamant S., Cathala B., Moreau C., Potocki-Veronese G., Bozonnet S., Laville E., Cleret M. Procédé de détection optique (2017). French patent filled by the Université de Lille 1 – Sciences et Technologies N° 17 54926
  • Guo Z., Duquesne S., Bozonnet S., Nicaud JM., Marty A., O’Donohue M. J. – Conferring cellulose-degrading ability to Yarrowia lipolytica – Production of a strain able to degrade cellulose and metabolize glucose in an integrated process ». EP 17155699.6 déposée le 10/02/2017
  • Alvarez P., Amillastre E. Duquesne S., Marty A. – WO/2016/062695 ; PCT/EP2015/074222 ; Date de publication: 28.04.2016 et Date de dépôt international: 20.10.2015, au nom de CARBIOS – Polypeptide présentant une activité de dégradation de polyester et utilisations de celui-ci
  • Desrousseaux ML., Texier H., Duquesne S., Marty A., Alaoui Dalibey M., Château M. – A process for degrading plastic products – EP16305578; WO2017198786, déposé le 12/07/16 au nom de CARBIOS
  • Ahmeri R., Trabelsi S., Mesghani M., Laville E., Potocki-Veronese G., Hmida-Sayari A., El Gharbi F.,  Bejar S. Séquence nucléotidique à partir d’une banque métagénomique de microbiote intestinal du dromadaire incluant un cluster de gènes codant des enzymes originales pour l’alimentation animale et la dégradation de lignocelluloses. Demande de brevet TN2016/0032, déposé le 19/08/2016 par le Centre de Biotechnologie de Sfax **
  • Tournier V., Texier H., Desrousseaux M.-L., Topham C., Barbe S., André I., Duquesne S., Marty A. (2016) Novel esterases and uses thereof. EP16305899.3, déposé le 12/07/2016 au nom de CARBIOS, PCT en 2018 : WO2018011284
  • Topham C., Texier H., Tournier V., Desrousseaux M.-L., Duquesne S., Barbe S., André I., Marty A. (2016) Novel esterases and uses thereof. EP16305898.5, déposé le 12/07/2016 au nom de CARBIOS, PCT en 2018 : WO2018011281
  • Guicherd M., Vuillemin M., Benkhaled M., Duquesne S., Marty A. – Improved plastic degrading proteases. Déposée le 16 décembre 2016 au nom de CARBIOS; WO2018/109183 A1
  • O’Donohue M., Dumon C., Alvira P. (2015) Hemicellulose-degrading compositions and uses thereof. (2015) Demande de brevet Européen enregistré le 25/02/2014 sous le numéro EP 15305289.9.
  • I. André, S. Grelier, D. Guieysse, A. Lafraya, P. Monsan, C. Moulis, F. Peruch, M. Remaud-Siméon, M. Vuillemin (2015) Production de synthons glycosylés par voie enzymatique et polymérisables par voie chimique. FR 20150052254, déposé le 19/03/2015
  • Z. Guo, S. Duquesne, S. Bozonnet, JM. Nicaud, A. Marty, M. J. O’Donohue – Mutant yeast strain capable of degrading cellobiose – DI-RV-14-0088 A. MARTY – N/Réf. : XRN/ll – F0539CAS00178/EP, déposé le 23/04/2015
  • Grimaud F., Moulis C., Remaud-Siméon M., Castaing JC., Gelo-Pujic M, Labeau MP., Meyrant P. Procédé de bioproduction de dextranes et utilisations dans des compositions cosmétique ou détergente. Demande de brevet N°1562759A (déposé le 18 décembre 2015 au nom de Rhodia Opérations).
  • Grimaud F., Moulis C., Remaud-Siméon M., Labeau MP. – Dérivés de dextranes de haute masse molaire modifiés. – Demande de brevet N°1562755 (déposé le 18 décembre 2015 au nom de Rhodia Opérations).
  • Dusséaux S., Lajus S., Verbeke J., Beopoulos A., Borsenberger V., Nicaud JM,  Bordes F., Marty A.,  2015 – Recombinant yeast cells producing polylactic acid and the uses thereof – PCT/EP2016/081205. (déposé en décembre 2015 au nom de CARBIOS)
  • Arrizon J., Morel. S., Monsan. P., Gschaedler. A., Sandoval. G – Process for producing and applying fructanse enzymes resulting from Kluveyromyces marxianus yeasts in the hydrolysis of branched fructans of agavaceae, gramineae and/or grass plants – Brevet en collaboration avec CIATEJ-Mexique. MX2011003876 (A) déposé le 2015-09-29

Vuillemin M., Claverie M, Grimaud F, Sabate A, Garnier C., Dols-Lafargue M, Lucas P., Monsan P, Moulis C, Remaud-Simeon M. Dextrane présentant une très haute masse molaire. PCT/EP2015/063864 (déposé le 20 juin 2014 sous le numéro de priorité FR1455751). Egalement publié sous les numéros WO2015193492(A1)- US2017145120(A1).


Vuillemin M, Claverie M, Severac E, Fontagnie-Faucher C, Monsan P, Moulis C, Remaud-Simeon M. Protéine à activité dextrane-saccharase et applications. PCT/FR2015/052002 (déposé le 28/07/2014 sous le numéro de priorité FR14 57264). Egalement publié sous les numéros WO 2016016544(A1)- US2017247669(A1).