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Scientific production

Articles

  • Sydow A, Becker L, Lombard E, Ulber R, Guillouet SE, Holtmann D (2023). Autotrophic Production of the Sesquiterpene α-Humulene with Cupriavidus necator in a Controlled Bioreactor. Bioengineering 10(10):1194
  • Boy, C., Lesage, J., Alfenore, S., Gorret, N. and Guillouet, S.E. (2023) Comparison of plasmid stabilization systems during heterologous isopropanol production in fed-batch bioreactor. J Biotechnol 366, 25-34. https://doi.org/10.1016/j.jbiotec.2023.02.011
  • Timoumi, A., Nguyen, T.C., Le, T., Kraiem, H., Cescut, J., Anne-Archard, D., Gorret, N., Molina-Jouve, C., To, K.A. and Fillaudeau, L. (2023) Comparison of methods to explore the morphology and granulometry of biological particles with complex shapes: Interpretation and limitations. Powder Technology 415, 118067.
  • Boy, C., Lesage, J., Alfenore, S., Guillouet, S.E. and Gorret, N. (2022) Co-expression of an isopropanol synthetic operon and eGFP to monitor the robustness of Cupriavidus necator during isopropanol production. Enzyme and Microbial Technology 161, 110114. https://doi.org/10.1016/j.enzmictec.2022.110114
  • Boy, C., Lesage, J., Alfenore, S., Guillouet, S.E. and Gorret, N. (2022) Study of plasmid-based expression level heterogeneity under plasmid-curing like conditions in Cupriavidus necator. J Biotechnol 345, 17-29.
  • Boy C, Lesage J, Alfenore S, Guillouet SE, Gorret N (2021) Investigation of the robustness of Cupriavidus necator engineered strains during fed-batch cultures. AMB Express 11(1):151 doi:10.1186/s13568-021-01307-4
  • Lesage J, Timoumi A, Cenard S, Lombard E, Lee HLT, Guillouet SE, Gorret N (2021) Accelerostat study in conventional and microfluidic bioreactors to assess the key role of residual glucose in the dimorphic transition of Yarrowia lipolytica in response to environmental stimuli. New Biotechnology 64:37-45 doi:https://doi.org/10.1016/j.nbt.2021.05.004
  • Garrigues L, Do TD, Bideaux C, Guillouet SE, Meynial-Salles I (2021) Insights into Clostridium tetani: From genome to bioreactors. Biotechnology Advances:107781 doi:https://doi.org/10.1016/j.biotechadv.2021.107781
  • Barthe M, Tchouanti-Fotso J, Gomes P, Bideaux C, Lestrade D, Graham C, Steyer J-P, Meleard S, Harmand J, Gorret N, Cocaign-Bousquet M, Enjalbert B. (2021). Availability of the molecular switch XylR controls phenotypic heterogeneity and lag duration during Escherichia coli adaptation from glucose to xylose. mBio mBio02938-20.
  • Zongo O, Cruvellier N, Leray F, Bideaux C, Lesage J, Zongo C, Traoré Y, Savadogo A, Guillouet S. (2020). Physicochemical composition and fermentation kinetics of a novel Palm Sap-based Kefir Beverage from the fermentation of Borassus aethiopum Mart. fresh sap with kefir grains and ferments. Scientific African 10:e00631.
  • Villela SMA, Kraiem H, Bouhaouala-Zahar B, Bideaux C, Lara CAA, Fillaudeau L. (2020). A protocol for recombinant protein quantification by densitometry. Microbiology Open 9:8. 
  • Garrigues L, Maignien L, Lombard E, Singh J, Guillouet SE. (2020.) Isopropanol production from carbon dioxide in Cupriavidus necator in a pressurized bioreactor. New Biotechnology 56:16-20. 
  • Boy C, Lesage J, Alfenore S, Gorret N, Guillouet SE. (2020). Plasmid expression level heterogeneity monitoring via heterologous eGFP production at the single-cell level in Cupriavidus necator. Applied Microbiology and Biotechnology 104:5899-5914.

  • Boukazia Y, Delaplace G, Cadé M, Bellouard F, Bégué M, Semmar N, Fillaudeau L. (2020). Metrological performances of fouling sensors based on steady thermal excitation applied to bioprocess. Food and Bioproducts Processing 119:226-237. 

  • Zongo O, Tapsoba F, Leray F, Bideaux C, Guillouet S, Traoré Y, Savadogo A. (2019). Nutritional, biochemical and microbiological composition of Borassus aethiopum Mart. sap in Burkina Faso. Journal of Food Science and Technology. doi: 10.1007/s13197-019-04078-w
  • Xie X, Andre C, Dietrich N, Schmitz P, Fillaudeau L. (2019). Flow investigation in an innovating dynamic filtration module using tracing methods. Separation and Purification Technology 227:115656.
  • Tien Cuong N, Anne-Archard D, Cameleyre X, Lombard E, Kim Anh T, Fillaudeau L. (2019). Bio-catalytic hydrolysis of paper pulp using in- and ex-situ multi-physical approaches: Focus on semidilute conditions to progress towards concentrated suspensions. Biomass & Bioenergy 122:28-36.
  • Deshors M, Guais O, Neugnot-Roux V, Cameleyre X, Fillaudeau L, François JM. (2019). Combined in-situ physical and ex-situ biochemical approaches to investigate in vitro desconstruction of destarched wheat bran by enzymes cocktails used in animal nutrition. Frontiers in Bioengineering and Biotechnology. doi: 10.3389/fbioe.2019.00158
  • Crepin L, Barthe M, Leray F, Guillouet SE. (2018). Alka(e)ne synthesis in Cupriavidus necator boosted by the expression of endogenous and heterologous ferredoxin-ferredoxin reductase systems. Biotechnol Bioeng 115:2576-2584.
  • Timoumi A, Guillouet SE, Molina-Jouve C, Fillaudeau L, Gorret N. 2018. Impacts of environmental conditions on product formation and morphology of Yarrowia lipolytica. Appl Microbiol Biotechnol 102:3831-3848.. doi: 10.1007/s00253-018-8870-3
  • Robles-Rodriguez CE, Munoz-Tamayo R, Bideaux C, Gorret N, Guillouet SE, Molina-Jouve C, Roux G, Aceves-Lara CA. (2018). Modeling and optimization of lipid accumulation by Yarrowia lipolytica from glucose under nitrogen depletion conditions. Biotechnol Bioeng 115:1137-1151. doi: 10.1002/bit.26537
  • Sagnak, Rana, Cochot, Sandrine, Molina-Jouve, Carole, Nicaud, Jean-Marc, & Guillouet, Stéphane E. (2018). Modulation of the Glycerol Phosphate availability led to concomitant reduction in the citric acid excretion and increase in lipid content and yield in Yarrowia lipolytica. Journal of Biotechnology, 265, 40-45. doi: https://doi.org/10.1016/j.jbiotec.2017.11.001
  • Xie X, Le Men C, Dietrich N, Schmitz P, Fillaudeau L. (2018). Local hydrodynamic investigation by PIV and CFD within a Dynamic filtration unit under laminar flow. Separation and Purification Technology 198:38-51.
  • Xie X, Dietrich N, Fillaudeau L, Le Men C, Schmitz P, Liné A. (2018). Local hydrodynamics investigation within a dynamic filtration unit under laminar flow. Chemical Engineering Research and Design 132:954-965.
  • El Rayess Y, Devatine A, Albasi C, Fillaudeau L. (2018). La filtration dynamique : Un nouveau concept pour la filtration des vins chargés en particules. Articles Techniques – Revue des Œnologues 167:26-29.
  • Camarasa C, Chiron H, Daboussi F, Della Valle G, Dumas C, Farines V, Floury J, Gagnaire V, Gorret N, Leonil J, Mouret J-R, O’Donohue MJ, Sablayrolles J-M, Salmon J-M, Saulnier L, Truan G. (2018). INRA’s research in industrial biotechnology: For food, chemicals, materials and fuels. Innovative Food Science & Emerging Technologies 46:140-152.
  • Aceves Lara CA, Athès V, Buche P, Della Valle G, Farines V, Fonseca F, Guillard V, Kansou K, Kristiawan M, Monclus V, Mouret J-R, Ndiaye A, Neveu P, Passot S, Pénicaud C, Sablayrolles J-M, Salmon J-M, Thomopoulos R, Trelea IC. (2018). The virtual food system: Innovative models and experiential feedback in technologies for winemaking, the cereals chain, food packaging and eco-designed starter production. Innovative Food Science & Emerging Technologies 46:54-64.
  • Timoumi A, Bideaux C, Guillouet SE, Allouche Y, Molina-Jouve C, Fillaudeau L, Gorret N. (2017). Influence of oxygen availability on the metabolism and morphology of Yarrowia lipolytica: insights into the impact of glucose levels on dimorphism. Appl Microbiol Biotechnol 101:7317-7333.
  • Marc, J., Grousseau, E., Lombard, E., Sinskey, A. J., Gorret, N., & Guillouet, S. E. (2017). Over expression of GroESL in Cupriavidus necator for heterotrophic and autotrophic isopropanol production. Metab Eng, 42, 74-84. doi: 10.1016/j.ymben.2017.05.007
  • Andin, Nicolas, Longieras, Antoine, Veronese, Thierry, Marcato, Frédéric, Molina-Jouve, Carole, & Uribelarrea, Jean-Louis. (2017). Improving carbon and energy distribution by coupling growth and medium chain length polyhydroxyalkanoate production from fatty acids by Pseudomonas putida KT2440. Biotechnology and Bioprocess Engineering, 22(3), 308-318. doi: 10.1007/s12257-016-0449-1
  • Le T, Anne-Archard D, Coma V, Cameleyre X, Lombard E, To KA, Pham TA, Nguyen TC, Fillaudeau L. (2017). Using in-situ viscosimetry and morphogranulometry to explore hydrolysis mechanisms of filter paper and pretreated sugarcane bagasse under semi-dilute suspensions. Biochemical Engineering Journal 127:9-20.
  • Kraiem H, Zouari F, Abderrazek RB, Manon Y, Ayeb ME, Fillaudeau L, Bedoui J, Bouhaouala-Zahar B. (2017). Two-Dimensional Isoelectric Focusing OFFGEL, Micro-Fluidic Lab-on-Chip Electrophoresis and FTIR for Assessment of Long-Term Stability of rhG-CSF Formulation. IEEE transactions on nanobioscience 16:694-702.
  • Robles-Rodriguez CE, Bideaux C, Guillouet SE, Gorret N, Cescut J, Uribelarrea J-L, Molina-Jouve C, Roux G, Aceves-Lara CA (2017). Dynamic metabolic modeling of lipid accumulation and citric acid production by Yarrowia lipolytica. Computers & Chemical Engineering doi:http://dx.doi.org/10.1016/j.compchemeng.2017.02.013
  • Sydow, Anne, Pannek, Andreas, Krieg, Thomas, Huth, Ina, Guillouet, Stéphane E., & Holtmann, Dirk. (2017). Expanding the genetic tool box for Cupriavidus necator by a stabilized L-rhamnose inducible plasmid system. Journal of Biotechnology. doi: https://doi.org/10.1016/j.jbiotec.2017.10.002
  • Meneghel, J., Passot, S., Cenard, S., Refregiers, M., Jamme, F., & Fonseca, F. (2017). Subcellular membrane fluidity of Lactobacillus delbrueckii subsp. bulgaricus under cold and osmotic stress. Appl Microbiol Biotechnol, 101(18), 6907-6917. doi: 10.1007/s00253-017-8444-9
  • Alfenore S, Molina-Jouve C (2016). Special Issue “Bioenergies, Present and Prospects” Foreword. Process Biochemistry 51(11):1745-1746 doi:10.1016/j.procbio.2016.10.019
  • Alfenore S, Molina-Jouve C (2016). Current status and future prospects of conversion of lignocellulosic resources to biofuels using yeasts and bacteria. Process Biochemistry 51(11):1747-1756 doi:http://dx.doi.org/10.1016/j.procbio.2016.07.028
  • Timoumi A, Cléret M, Bideaux C, Guillouet SE, Allouche Y, Molina-Jouve C, Fillaudeau L, Gorret N (2016). Dynamic behavior of Yarrowia lipolytica in response to pH perturbations: dependence of the stress response on the culture mode. Applied Microbiology and Biotechnology:1-16 doi:10.1007/s00253-016-7856-2
  • El Rayess Y, Manon Y, Jitariouk N, Albasi C, Peuchot MM, Devatine A, Fillaudeau L (2016). Wine clarification with Rotating and Vibrating Filtration (RVF): Investigation of the impact of membrane material, wine composition and operating conditions. Journal of Membrane Science 513:47-57 doi:10.1016/j.memsci.2016.03.058
  • Crepin L, Lombard E, Guillouet SE (2016). Metabolic engineering of Cupriavidus necator for heterotrophic and autotrophic alka(e)ne production. Metabolic Engineering 37:92-101 doi:10.1016/j.ymben.2016.05.002
  • Cavaille L, Albuquerque M, Grousseau E, Lepeuple AS, Uribelarrea JL, Hernandez-Raquet G, Paul E (2016). Understanding of polyhydroxybutyrate production under carbon and phosphorus-limited growth conditions in non-axenic continuous culture. Bioresource Technology 201:65-73 doi:10.1016/j.biortech.2015.11.003
  • Bideaux C, Montheard J, Cameleyre X, Molina-Jouve C, Alfenore S (2016). Metabolic flux analysis model for optimizing xylose conversion into ethanol by the natural C5-fermenting yeast Candida shehatae. Applied Microbiology and Biotechnology 100(3):1489-1499 doi:10.1007/s00253-015-7085-0
  • Hajjaj H, Goma G, Francois JM (2015). Effect of the cultivation mode on red pigments production from Monascus ruber. Int J Food Sci Technol 50(8):1731-1736 doi:10.1111/ijfs.12803
  • Grunwald S, Mottet A, Grousseau E, Plassmeier JK, Popovic MK, Uribelarrea JL, Gorret N, Guillouet SE, Sinskey A (2015). Kinetic and stoichiometric characterization of organoautotrophic growth of Ralstonia eutropha on formic acid in fed-batch and continuous cultures. Microbial Biotechnology 8(1):155-163 doi:10.1111/1751-7915.12149
  • Froissard M, Canonge M, Pouteaux M, Cintrat B, Mohand-Oumoussa S, Guillouet SE, Chardot T, Jacques N, Casaregola S (2015). Lipids containing medium-chain fatty acids are specific to post-whole genome duplication Saccharomycotina yeasts. BMC Evol Biol 15 doi:10.1186/s12862-015-0369-2
  • Bornot J, Molina-Jouve C, Uribelarrea JL, Gorret N (2015). Quantitative Characterization of the Growth of Deinococcus geothermalis DSM-11302: Effect of Inoculum Size, Growth Medium and Culture Conditions. Microorganisms 3:441-463 doi:10.3390/microorganisms30x000x
  • Richard L, Guillouet SE, Uribelarrea JL (2014). Quantification of the transient and long-term response of Saccharomyces cerevisiae to carbon dioxide stresses of various intensities. Process Biochemistry 49(11):1808-1818 doi:10.1016/j.procbio.2014.07.020
  • Ochoa-Estopier A, Guillouet SE (2014). D-stat culture for studying the metabolic shifts from oxidative metabolism to lipid accumulation and citric acid production in Yarrowia lipolytica. Journal of Biotechnology 170:35-41 doi:10.1016/j.jbiotec.2013.11.008
  • Grousseau E, Lu JN, Gorret N, Guillouet SE, Sinskey AJ (2014). Isopropanol production with engineered Cupriavidus necator as bioproduction platform. Applied Microbiology and Biotechnology 98(9):4277-4290 doi:10.1007/s00253-014-5591-0
  • Grousseau E, Blanchet E, Deleris S, Albuquerque MGE, Paul E, Uribelarrea JL (2014). Phosphorus limitation strategy to increase propionic acid flux towards 3-hydroxyvaleric acid monomers in Cupriavidus necator. Bioresource Technology 153:206-215 doi:10.1016/j.biortech.2013.11.072
  • Cescut J, Fillaudeau L, Molina-Jouve C, Uribelarrea JL (2014). Carbon accumulation in Rhodotorula glutinis induced by nitrogen limitation. Biotechnol Biofuels 7 doi:10.1186/s13068-014-0164-0
  • Bornot J, Molina-Jouve C, Uribelarrea JL, Gorret N (2014). Growth of the extremophilic Deinococcus geothermalis DSM 11302 using co-substrate fed-batch culture. Applied Microbiology and Biotechnology 98(3):1281-1290 doi:10.1007/s00253-013-5397-5
  • Bornot J, Aceves-Lara CA, Molina-Jouve C, Uribelarrea JL, Gorret N (2014). Experimental and statistical analysis of nutritional requirements for the growth of the extremophile Deinococcus geothermalis DSM 11300. Extremophiles 18(6):1009-1021 doi:10.1007/s00792-014-0671-8
  • Aguilar-Garnica E, Silva-Romero YE, Hernandez-Montelongo R, Garcia-Sandoval JP, Aceves-Lara CA (2014). Kinetic analysis for the esterification of high free fatty acid feedstocks with a structural identifiability approach. Eur J Lipid Sci Technol 116(11):1598-1607 doi:10.1002/ejlt.201400059
  • Sunya S, Bideaux C, Molina-Jouve C, Gorret N (2013). Short-term dynamic behavior of Escherichia coli in response to successive glucose pulses on glucose-limited chemostat cultures. Journal of Biotechnology 164(4):531-542 doi:10.1016/j.jbiotec.2013.01.014
  • Soussan L, Guigui C, Mathe C, Alfenore S, Cabassud C (2013). Enzyme-Labeled Phages Detected by Amperometry: A New Method to Study Inline Virus Retention in Membrane Processes. Aiche Journal 59(1):68-78 doi:10.1002/aic.13788
  • Soussan L, Alquier M, Guigui C, Alfenore S, Mathe S, Cabassud C (2013). Characterization of the inline virus removal performances in hollow fibre modules by a new tracer electrochemically detected. Water Sci Technol-Water Supply 13(2):507-514 doi:10.2166/ws.2013.054
  • Pagliardini J, Hubmann G, Alfenore S, Nevoigt E, Bideaux C, Guillouet SE (2013). The metabolic costs of improving ethanol yield by reducing glycerol formation capacity under anaerobic conditions in Saccharomyces cerevisiae. Microbial Cell Factories 12 doi:10.1186/1475-2859-12-29
  • Nguyen TC, Anne-Archard D, Coma V, Cameleyre X, Lombard E, Binet C, Nouhen A, To KA, Fillaudeau L (2013). In situ rheometry of concentrated cellulose fibre suspensions and relationships with enzymatic hydrolysis. Bioresource Technology 133:563-572 doi:10.1016/j.biortech.2013.01.110
  • Marc J, Feria-Gervasio D, Mouret JR, Guillouet SE (2013). Impact of oleic acid as co-substrate of glucose on “short” and “long-term” Crabtree effect in Saccharomyces cerevisiae. Microbial Cell Factories 12 doi:10.1186/1475-2859-12-83
  • Grousseau E, Blanchet E, Deleris S, Albuquerque MGE, Paul E, Uribelarrea JL (2013). Impact of sustaining a controlled residual growth on polyhydroxybutyrate yield and production kinetics in Cupriavidus necator. Bioresource Technology 148:30-38 doi:10.1016/j.biortech.2013.08.120
  • Cavaille L, Grousseau E, Pocquet M, Lepeuple AS, Uribelarrea JL, Hernandez-Raquet G, Paul E (2013). Polyhydroxybutyrate production by direct use of waste activated sludge in phosphorus-limited fed-batch culture. Bioresource Technology 149:301-309 doi:10.1016/j.biortech.2013.09.044
  • Brognaux A, Thonart P, Delvigne F, Neubauer P, Twizere JC, Francis F, Gorret N (2013). Direct and indirect use of GFP whole cell biosensors for the assessment of bioprocess performances: Design of milliliter scale-down bioreactors. Biotechnology Progress 29(1):48-59 doi:10.1002/btpr.1660
  • Bornot J, Molina-Jouve C, Uribelarrea J-L, Gorret N (2013). Growth of the extremophilic Deinococcus geothermalis DSM 11302 using co-substrate fed-batch culture. Applied Microbiology and Biotechnology:1-10 doi:10.1007/s00253-013-5397-5
  • Ben Gaida L, Andre C, Bideaux C, Alfenore S, Cameleyre X, Molina-Jouve C, Fillaudeau L (2013). Bioperformance interpretation of a two-stage membrane bioreactor with cell recycling for intensive microbial production using residence time and internal age distributions. Process Biochemistry 48(1):13-24 doi:10.1016/j.procbio.2012.10.015
  • Babau M, Cescut J, Allouche Y, Lombaert-Valot I, Fillaudeau L, Uribelarrea JL, Molina-Jouve C (2013). Towards a Microbial Production of Fatty Acids as Precursors of Biokerosene from Glucose and Xylose. Oil & Gas Science and Technology-Revue D Ifp Energies Nouvelles 68(5):899-911 doi:10.2516/ogst/2013148
  • Allouche Y, Cameleyre X, Guillouet S, Hulin S, Thevenieau F, Akomia L, Molina-Jouve C (2013). ProBio3 project: how to achieve scientific and technological challenges to boost the sustainable microbial production of lipids as biojet fuel and chemical compounds. OCL 20(6):D605 
  • Sunya S, Gorret N, Delvigne F, Uribelarrea JL, Molina-Jouve C (2012). Real-time monitoring of metabolic shift and transcriptional induction of yciG::luxCDABE E. coli reporter strain to a glucose pulse of different concentrations. Journal of Biotechnology 157(3):379-390 doi:10.1016/j.jbiotec.2011.12.009
  • Sunya S, Delvigne F, Uribelarrea JL, Molina-Jouve C, Gorret N (2012). Comparison of the transient responses of Escherichia coli to a glucose pulse of various intensities. Applied Microbiology and Biotechnology 95(4):1021-1034 doi:10.1007/s00253-012-3938-y
  • Montheard J, Garcier S, Lombard E, Cameleyre X, Guillouet S, Molina-Jouve C, Alfenore S (2012). Assessment of Candida shehatae viability by flow cytometry and fluorescent probes. Journal of Microbiological Methods 91(1):8-13 doi:10.1016/j.mimet.2012.07.002
  • Hajjaj H, Francois JM, Goma G, Blanc PJ (2012). Effect of Amino Acids on Red Pigments and Citrinin Production in Monascus ruber. Journal of Food Science 77(3):M156-M159 doi:10.1111/j.1750-3841.2011.02579.x
  • Ben Gaida L, Andre C, Bideaux C, Alfenore S, Cameleyre X, Molina-Jouve C, Fillaudeau L (2012). Modelling of hydrodynamic behaviour of a two-stage bioreactor with cell recycling dedicated to intensive microbial production. Chemical Engineering Journal 183:222-230 doi:10.1016/j.cej.2011.12.065
  • Beaufort S, Da Silva T, Lafforgue C, Alfenore S (2012). Fluorescent proteins as in-vivo and in-situ reporters to study the development of a Saccharomyces cerevisiae yeast biofilm and its invasion by the bacteria Escherichia coli. Fems Microbiology Ecology 80(2):342-351 doi:10.1111/j.1574-6941.2012.01301.x
  • Amillastre E, Aceves-Lara CA, Uribelarrea JL, Alfenore S, Guillouet SE (2012). Dynamic model of temperature impact on cell viability and major product formation during fed-batch and continuous ethanolic fermentation in Saccharomyces cerevisiae. Bioresource Technology 117:242-250 doi:10.1016/j.biortech.2012.04.013
  • Aguilar-Garnica E, Garcia-Sandoval JP, Aceves-Lara CA, Escalante FME (2012). An asymptotic observer-based monitoring scheme for a class of plug flow reactors. Water Science and Technology 65(2):205-213 doi:10.2166/wst.2012.572
  • Aceves-Lara CA, Latrille E, Conte T, Steyer JP (2012). Online estimation of VFA, alkalinity and bicarbonate concentrations by electrical conductivity measurement during anaerobic fermentation. Water Science and Technology 65(7):1281-1289 doi:10.2166/wst.2012.703
  • Soussan L, Guigui C, Alfenore S, Mathe S, Cabassud C (2011). A new biosynthetic tracer for the inline measurement of virus retention in membrane processes: Part II. Biochemical and physicochemical characterizations of the new tracer. Analytica Chimica Acta 690(2):199-208 doi:10.1016/j.aca.2011.01.029
  • Soussan L, Guigui C, Alfenore S, Mathe S, Cabassud C (2011). A new biosynthetic tracer for the inline measurement of virus retention in membrane processes: Part I – Synthesis protocol. Analytica Chimica Acta 690(2):190-198 doi:10.1016/j.aca.2011.02.022
  • Ochoa-Estopier A, Lesage J, Gorret N, Guillouet SE (2011). Kinetic analysis of a Saccharomyces cerevisiae strain adapted for improved growth on glycerol: Implications for the development of yeast bioprocesses on glycerol. Bioresource Technology 102(2):1521-1527 doi:10.1016/j.biortech.2010.08.003
  • Morin N, Cescut J, Beopoulos A, Lelandais G, Le Berre V, Uribelarrea JL, Molina-Jouve C, Nicaud JM (2011). Transcriptomic Analyses during the Transition from Biomass Production to Lipid Accumulation in the Oleaginous Yeast Yarrowia lipolytica. Plos One 6(11) doi:10.1371/journal.pone.0027966
  • Manon Y, Anne-Archard D, Uribelarrea JL, Molina-Jouve C, Fillaudeau L (2011). Physical and Biological Study of Cell Cultures In a Bioreactor: On-line and Off-line Rheological Analyses. Applied Rheology 21(3) doi:10.3933/ApplRheol-21-35167
  • Magniont C, Coutand M, Bertron A, Cameleyre X, Lafforgue C, Beaufort S, Escadeillas G (2011). A new test method to assess the bacterial deterioration of cementitious materials. Cement and Concrete Research 41(4):429-438 doi:10.1016/j.cemconres.2011.01.014
  • Kerfai S, Fernandez A, Mathe S, Alfenore S, Arlabosse P (2011). Production of green juice with an intensive thermo-mechanical fractionation process. Part II: Effect of processing conditions on the liquid fraction properties. Chemical Engineering Journal 167(1):132-139 doi:10.1016/j.cej.2010.12.011
  • Hubmann G, Guillouet S, Nevoigt E (2011). Gpd1 and Gpd2 Fine-Tuning for Sustainable Reduction of Glycerol Formation in Saccharomyces cerevisiae. Applied and Environmental Microbiology 77(17):5857-5867 doi:10.1128/aem.05338-11
  • Donoso-Bravo A, Mailier J, Martin C, Rodriguez J, Aceves-Lara CA, Vande Wouwer A (2011). Model selection, identification and validation in anaerobic digestion: A review. Water Research 45(17):5347-5364 doi:10.1016/j.watres.2011.08.059
  • Delvigne F, Brognaux A, Gorret N, Neubauer P, Delafosse A, Collignon ML, Toye D, Crine M, Boxus M, Thonart P (2011). Characterization of the response of GFP microbial biosensors sensitive to substrate limitation in scale-down bioreactors. Biochemical Engineering Journal 55(2):131-139 doi:10.1016/j.bej.2011.03.016
  • Delvigne F, Brognaux A, Francis F, Twizere JC, Gorret N, Sorensen SJ, Thonart P (2011). Green fluorescent protein (GFP) leakage from microbial biosensors provides useful information for the evaluation of the scale-down effect. Biotechnology Journal 6(8):968-978 doi:10.1002/biot.201000410
  • Cescut J, Severac E, Molina-Jouve C, Uribelarrea JL (2011). Optimizing pressurized liquid extraction of microbial lipids using the response surface method. Journal of Chromatography A 1218(3):373-379 doi:10.1016/j.chroma.2010.12.003
  • Beaufort S, Alfenore S, Lafforgue C (2011). Use of fluorescent microorganisms to perform in vivo and in situ local characterization of microbial deposits. Journal of Membrane Science 369(1-2):30-39 doi:10.1016/j.memsci.2010.11.023
  • Pagliardini J, Hubmann G, Bideaux C, Alfenore S, Nevoigt E, Guillouet SE (2010). Quantitative evaluation of yeast’s requirement for glycerol formation in very high ethanol performance fed-batch process. Microbial Cell Factories 9 doi:10.1186/1475-2859-9-36
  • Hery M, Sanguin H, Fabiel SP, Lefebvre X, Vogel TM, Paul E, Alfenore S (2010). Monitoring of bacterial communities during low temperature thermal treatment of activated sludge combining DNA phylochip and respirometry techniques. Water Research 44(20):6133-6143 doi:10.1016/j.watres.2010.07.003
  • Fromanger R, Guillouet SE, Uribelarrea JL, Molina-Jouve C, Cameleyre X (2010). Effect of controlled oxygen limitation on Candida shehatae physiology for ethanol production from xylose and glucose. Journal of Industrial Microbiology & Biotechnology 37(5):437-445 doi:10.1007/s10295-009-0688-7
  • Aceves-Lara CA, Latrille E, Steyer JP (2010). Optimal control of hydrogen production in a continuous anaerobic fermentation bioreactor. International Journal of Hydrogen Energy 35(19):10710-10718 doi:10.1016/j.ijhydene.2010.02.110

Patents

  • Kerfai S, Reboul B, Alfenore S, Resende De Azevedo J, Fernadez M. A, Mathe S,  Usta M. A,  Re M, Montaner M, (2019). Procédé de production de la Rubisco à partir d’une biomasse végétale. Déposé le 27/06/2019, numéro de dépôt 19 07012

  • Sanhaji G, Carnot O, Maret D, Bresin A, Cameleyre X, Aymard C, Bouillon PA (2015). Procédé de production d’éthanol utilisant des sucres à 5 et 6 atomes de carbone. FR3015519-A1, 
  • Pompon D, Paques F, Lesage J, Guillouet S, Bonnot F, Marc J, Gorret N, Bideaux C, Boutonnet C (2015). Levures modifiées pour utiliser le dioxyde de carbone. WO2015107496 A1 – PCT/IB2015/050346,
  • Marc J, Bonnot F, Boutonnet C, Bideaux C, Gorret N, Guillouet S, Pompon D (2015). Combinaison de chaperonnes bactériennes affectant positivement la physiologie d’une souche de levure native ou portant une ingénierie. EP15305049,

  • Vilarem G, Rigal L, Vandenbossche V, Brault J, Hernandez Luna M, Hernandez-Melendez O, Vivaldo Lima Z, Barzana Garcia E, Ballesteros M, Duque A, Manzanares P, Siika-Aho MS, Uusitalo JM, Mata-Segreda J, Guillouet S, Lombard E, Cameleyre X (2013). Method of enzymatic treatment of a solid lignocellulosic material. WO2013182827 A1 – PCT/FR2013/051317

  • Portelli B, Jouve C, Uribelarrea JL (2012). Procédé de culture de levures oléagineuses sur substrat carboné. WO2013057122 A1 / PCT/EP2012/070518, 
  • Nevoigt E, Guillouet S, Bideaux C, Alfenore S, Hubmann G (2012). Method of modifying a yeast cell for the production of ethanol. EP2222860 B1 – PCT/IB2008/003672, 
  • Albuquerque MGE, Deleris S, Uribelarrea JL, Paul E, Grousseau E (2012). Methods for producing polyhydroxyalkanoates by microorganisms. WO2014102297 A1 – PCT/EP2013/078015, 
  • Crattelet J, Auret L, Fillaudeau L (2010). Procédé de mesure ou de détection de l’encrassement d’un réacteur. WO2011018592 A1 – PCT/FR2010/051714, 
  • Crattelet J, Auret L, Boukabache A, Esteve D, Fillaudeau L (2010). Capteur microsysteme de mesure ou de détection d’encrassement. EP2387709 A1 – EP20100707321,

Chapitres d'ouvrages

  • Nguyen TC, Anne-Archard D, Fillaudeau L (2015). Rheology of Lignocellulose Suspensions and Impact of Hydrolysis: A Review. In: Krull R, Bley T (eds) Filaments in Bioprocesses. Advances in Biochemical Engineering-Biotechnology, vol 149. Springer-Verlag Berlin, Berlin, pp 325-357

  • Yazdanshenas M, Nejad S, Soltanieh M, Fillaudeau L (2012). Analysis of Fouling and Behavior in Cross-Flow Microfiltration of Nonalcoholic Beer by Ceramic Membrane. In: Ismail AF, Matsuura T (eds) Sustainable Membrane Technology for Energy, Water, and Environment. John Wiley & Sons Inc, Hoboken, pp 157-167

  • Fillaudeau L, Blanpain-Avet P, Moll M (2011). Techniques en brasserie – Technologies associées à la clarification – Applications et techniques Techniques de l’Ingénieur, Traité Agro-alimentaire. vol F3260, 
  • Fillaudeau L, Blanpain-Avet P, Moll M (2011). Techniques en brasserie – Opportunités et réalité des procédés membranaires – Potentiel des procédés membranaires Techniques de l’Ingénieur, Traité Agro-alimentaire. vol F3261, 
  • Delvigne F, Brognaux A, Gorret N, Sorensen SJ, Crine M, Thonart P (2011). Applicability of GFP Microbial Whole Cell Biosensors to Bioreactor Operations : Mathematical Modeling and Related Experimental Tools Biosensors – Emerging Materials and Applications. InTech, pp 601-630
  • Fillaudeau L, Crattelet J, Auret L (2010). Fouling monitoring using differential thermal analyse under steady and periodic heat flow. In: Heldman DR, Moraru CI (eds) Encyclopedia of Agricultural, Food and Biological Engineering, Second Edition. Dennis R. Heldman, Marcel Dekker Inc., 270 Madison avenue, New York, NY 10016 edn